RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 NR4A1P22736 598 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 CERS1P27544 350 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 FMO3P31513 532 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 LSSP48449 732 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 PRIM2P49643 509 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 DAPP51397 102 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 MVDP53602 400 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 MAZP56270 477 aaKnown RBP12.08□□□□□ -0.48
CLK3-201ENST00000345005 ZXDAP98168 799 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 SELENBP1Q13228 472 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 DNASE1L3Q13609 305 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 TIMM50Q3ZCQ8 353 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 OGFOD3Q6PK18 319 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 CCDC81Q6ZN84 652 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 RNF44Q7L0R7 432 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 ABHD13Q7L211 337 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 BTLAQ7Z6A9 289 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 CYP4Z1Q86W10 505 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 LYSMD2Q8IV50 215 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 HS3ST5Q8IZT8 346 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 PSMA8Q8TAA3 256 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 SMIM10Q96HG1 83 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 SIGLEC11Q96RL6 698 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 SERINC2Q96SA4 455 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 DPH2Q9BQC3 489 aaPredicted RBP12.08□□□□□ -0.48
CLK3-201ENST00000345005 TMEM38AQ9H6F2 299 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 SLAMF7Q9NQ25 335 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 EVA1BQ9NVM1 165 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 GPATCH2Q9NW75 528 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 ENOPH1Q9UHY7 261 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 UTS2RQ9UKP6 389 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 FBXW2Q9UKT8 454 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 ATG4BQ9Y4P1 393 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 PMF1-BGLAPU3KQ54 211 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 SCN2AQ99250 2005 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 CCDC88CQ9P219 2028 aa12.08□□□□□ -0.48
CLK3-201ENST00000345005 LILRA5A6NI73 299 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 METTL15A6NJ78 407 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 H0YGG7 62 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 PROM1O43490 865 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 IDH3BO43837 385 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 TNFRSF21O75509 655 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 RPLP0P05388 317 aaKnown RBP12.07□□□□□ -0.48
CLK3-201ENST00000345005 PVRP15151 417 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 NTSP30990 170 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 SOX6P35712 828 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 PI4KAP42356 2102 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 CTSKP43235 329 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 TPTEP56180 551 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ARF3P61204 181 aaPredicted RBP12.07□□□□□ -0.48
CLK3-201ENST00000345005 DMWDQ09019 674 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 COX20Q5RI15 118 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 GCNT6Q5T4J0 391 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 EIF3MQ7L2H7 374 aaKnown RBP12.07□□□□□ -0.48
CLK3-201ENST00000345005 C17orf82Q86X59 251 aaPredicted RBP12.07□□□□□ -0.48
CLK3-201ENST00000345005 RNF130Q86XS8 419 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 DEPDC4Q8N2C3 294 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 C9orf43Q8TAL5 461 aaPredicted RBP12.07□□□□□ -0.48
CLK3-201ENST00000345005 NEURL3Q96EH8 262 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 HRASLS5Q96KN8 279 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 BBS4Q96RK4 519 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 SLC38A3Q99624 504 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 CXorf36Q9H7Y0 433 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 C1GALT1Q9NS00 363 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ZSCAN32Q9NX65 697 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 PDP1Q9P0J1 537 aaPredicted RBP12.07□□□□□ -0.48
CLK3-201ENST00000345005 C5AR2Q9P296 337 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 PHF11Q9UIL8 331 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 TNRC6BQ9UPQ9 1833 aaKnown RBP12.07□□□□□ -0.48
CLK3-201ENST00000345005 LOC105369274A0A096LPK9 316 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 LOC102723532A0A0G2JNH3 316 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 E9PQ18 207 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ZNF682O95780 498 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 AIFM1O95831 613 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 C9P02748 559 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 NUDT7P0C024 238 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ETFAP13804 333 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ETV6P41212 452 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 MAP2K4P45985 399 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 NPRL3Q12980 569 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 HSPB3Q12988 150 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ZNF630Q2M218 657 aaPredicted RBP12.07□□□□□ -0.48
CLK3-201ENST00000345005 SPDYE7PQ495Y7 208 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ATAD3BQ5T9A4 648 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 SAXO2Q658L1 398 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 FRMPD2BQ6IN97 320 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 FAM180BQ6P0A1 224 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 FAHD1Q6P587 224 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 SLC30A8Q8IWU4 369 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 OR4N4Q8N0Y3 316 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 POC5Q8NA72 575 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ATG16L2Q8NAA4 619 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 OR5AK3PQ8NH89 298 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 GABARAPL3Q9BY60 117 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 ERVMER34-1Q9H9K5 563 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 GIMAP4Q9NUV9 329 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 CES1P1Q9UKY3 287 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 SATB2Q9UPW6 733 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 RNF6Q9Y252 685 aa12.07□□□□□ -0.48
CLK3-201ENST00000345005 MAP4K5Q9Y4K4 846 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 126.6 ms