RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FRG2Q64ET8 278 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 OR7E24Q6IFN5 339 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 C3orf33Q6P1S2 294 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 SLC16A14Q7RTX9 510 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 YRDCQ86U90 279 aaKnown RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 SLC34A3Q8N130 599 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 C4orf33Q8N1A6 199 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 OR5AR1Q8NGP9 310 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 QKIQ96PU8 341 aaKnown RBP eCLIP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 FRG2BQ96QU4 278 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 COPS4Q9BT78 406 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 TAS2R7Q9NYW3 318 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 MYOCOSA0A1B0GUC4 107 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 C11orf98E9PRG8 122 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 HPP00738 406 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 NDUFB7P17568 137 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ACVR2AP27037 513 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 CRISP1P54107 249 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 DCAF10Q5QP82 559 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 KCNIP4Q6PIL6 250 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 PIWIL4Q7Z3Z4 852 aaKnown RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 FBXL16Q8N461 479 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 TECTBQ96PL2 329 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ADOQ96SZ5 270 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 OLFM1Q99784 485 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ACP6Q9NPH0 428 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 SERHLQ9NQF3 203 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 SIX4Q9UIU6 781 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 IGHV1OR21-1A0A087WYE8 117 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 HTR3EA5X5Y0 456 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 H6PDO95479 791 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 EPXP11678 715 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 DNAJB1P25685 340 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 HMGCLP35914 325 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 CHRNA4P43681 627 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 MAP2K4P45985 399 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 ARSHQ5FYA8 562 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 EARS2Q5JPH6 523 aaKnown RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 NADSYN1Q6IA69 706 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 FBXO42Q6P3S6 717 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 HSD11B1LQ7Z5J1 315 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 THOC1Q96FV9 657 aaKnown RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 CNOT6Q9ULM6 557 aaKnown RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 LOC100289279A0A1B0GTE1 492 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 PRAMEF25A6NGN4 478 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 VNN2O95498 520 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 TBPL1P62380 186 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 SLC35A1P78382 337 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.92□□□□□ -1.14
HMGB1-203ENST00000341423 OR6K6Q8NGW6 343 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 LINC01599Q8WXQ3 324 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 PITX2Q99697 317 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 GABRG3Q99928 467 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 PELI2Q9HAT8 420 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 C2orf42Q9NWW7 574 aa7.92□□□□□ -1.14
HMGB1-203ENST00000341423 SCN4AP35499 1836 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 KPNA4O00629 521 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 PENKP01210 267 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 MMP11P24347 488 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 RCVRNP35243 200 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 AFF1P51825 1210 aaKnown RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 C17orf67Q0P5P2 114 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 TRAF2Q12933 501 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 RBM39Q14498 530 aaKnown RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 MAD2L1BPQ15013 274 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 DPY19L1Q2PZI1 675 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 TNFAIP8L2Q6P589 184 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 PODNL1Q6PEZ8 512 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 PROSER1Q86XN7 944 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 SLC15A3Q8IY34 581 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 ZNF567Q8N184 647 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 KAT2AQ92830 837 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 DNAJA3Q96EY1 480 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 TMEM43Q9BTV4 400 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 C1QTNF6Q9BXI9 259 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 TDRD1Q9BXT4 1180 aaKnown RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 GHITMQ9H3K2 345 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 NLE1Q9NVX2 485 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 XPR1Q9UBH6 696 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 ZFP69BQ9UJL9 534 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 SPTBN1Q01082 2364 aaKnown RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 C9orf172C9J069 976 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 INMTO95050 263 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 OXSR1O95747 527 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 GPR157Q5UAW9 335 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 TMEM65Q6PI78 240 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 CLEC9AQ6UXN8 241 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 TSPAN33Q86UF1 283 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 GPA33Q99795 319 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 CPPED1Q9BRF8 314 aaPredicted RBP7.91□□□□□ -1.14
HMGB1-203ENST00000341423 IFT27Q9BW83 186 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 ACACBO00763 2458 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 AKAP6Q13023 2319 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 LRIT2A6NDA9 550 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 STX16-NPEPL1H3BU86 382 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 PYCARD-AS1I3L0S3 204 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 STX16O14662 325 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 SUV39H1O43463 412 aa7.91□□□□□ -1.14
HMGB1-203ENST00000341423 ZGLP1P0C6A0 271 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms