RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 PTCHD3Q3KNS1 767 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 ZDHHC20Q5W0Z9 365 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 LYSMD4Q5XG99 296 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 ACSM2BQ68CK6 577 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 DPY19L3Q6ZPD9 716 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 USP30Q70CQ3 517 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 BPHLQ86WA6 291 aaPredicted RBP9.76□□□□□ -0.85
UPF3B-201ENST00000276201 RAVER1Q8IY67 606 aaKnown RBP9.76□□□□□ -0.85
UPF3B-201ENST00000276201 FAM26EQ8N5C1 309 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 OR9Q2Q8NGE9 314 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 OR8J1Q8NGP2 316 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 TMEM163Q8TC26 289 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 APOBEC4Q8WW27 367 aaKnown RBP9.76□□□□□ -0.85
UPF3B-201ENST00000276201 SNAPC3Q92966 411 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 HIST1H2AHQ96KK5 128 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 HYLS1Q96M11 299 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 COQ7Q99807 217 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 HIST1H2AJQ99878 128 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 H2AFJQ9BTM1 129 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 GPR174Q9BXC1 333 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 PPP1R3EQ9H7J1 279 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 NMNAT1Q9HAN9 279 aaPredicted RBP9.76□□□□□ -0.85
UPF3B-201ENST00000276201 EXOSC4Q9NPD3 245 aaKnown RBP9.76□□□□□ -0.85
UPF3B-201ENST00000276201 PCDHB9Q9Y5E1 797 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 PCDHGA5Q9Y5G8 931 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 CEP192Q8TEP8 1941 aa9.76□□□□□ -0.85
UPF3B-201ENST00000276201 GON4LQ3T8J9 2241 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 PCDH17O14917 1159 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 HBQ1P09105 142 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 C5AR1P21730 350 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 CFL1P23528 166 aaKnown RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 GPC1P35052 558 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 MPLP40238 635 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 CHIT1Q13231 466 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 MAB21L1Q13394 359 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 PDE7AQ13946 482 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 CHRNA6Q15825 494 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 POM121L1PQ3SYA9 428 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 C3orf38Q5JPI3 329 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 PLA2G2CQ5R387 149 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 TRIM40Q6P9F5 258 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 CD200R1LQ6Q8B3 271 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 CD300LDQ6UXZ3 194 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 UNC5DQ6UXZ4 953 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 ZNF730Q6ZMV8 503 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 CLDN19Q8N6F1 224 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 AQP11Q8NBQ7 271 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 OR5H6Q8NGV6 325 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 GANCQ8TET4 914 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 MTERF3Q96E29 417 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 TRMT61AQ96FX7 289 aaKnown RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 HSPA12BQ96MM6 686 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 VPS35Q96QK1 796 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 KCNJ15Q99712 375 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 TM6SF2Q9BZW4 377 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 UCK2Q9BZX2 261 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 SMOC1Q9H4F8 434 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 NT5DC2Q9H857 520 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 FGF20Q9NP95 211 aaPredicted RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 GPATCH2Q9NW75 528 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 EIF3KQ9UBQ5 218 aaKnown RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 A0A1W2PQL4 384 aaPredicted RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 H3BM21 787 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 NOS1APO75052 506 aaPredicted RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 LRP3O75074 770 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 OR2B3O76000 313 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 CDRT1O95170 752 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 CCNYL3P0C7X3 344 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 PRKAR1AP10644 381 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 HK1P19367 917 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 ITPKAP23677 461 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 PFN3P60673 137 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 RHOAP61586 193 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 RRAS2P62070 204 aaPredicted RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 SF3A2Q15428 464 aaKnown RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 ATXN7L2Q5T6C5 722 aaPredicted RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 LAMTOR1Q6IAA8 161 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 GHDCQ8N2G8 530 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 HDDC3Q8N4P3 179 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 OR4M1Q8NGD0 313 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 OR4A15Q8NGL6 344 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 ELMO1Q92556 727 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 FAM131CQ96AQ9 280 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 VOPP1Q96AW1 172 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 DIRAS2Q96HU8 199 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 KCTD7Q96MP8 289 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 GPR137Q96N19 417 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 COPS8Q99627 209 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 EBPLQ9BY08 206 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 POLR2J2Q9GZM3 115 aaKnown RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 BTBD1Q9H0C5 482 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 TESQ9UGI8 421 aaKnown RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 IL36AQ9UHA7 158 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 TSR3Q9UJK0 312 aaKnown RBP9.75□□□□□ -0.85
UPF3B-201ENST00000276201 ANGPT4Q9Y264 503 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 NCKAP1Q9Y2A7 1128 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 PPIL1Q9Y3C6 166 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 ALG5Q9Y673 324 aa9.75□□□□□ -0.85
UPF3B-201ENST00000276201 TMEM129A0AVI4 362 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms