RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 GADD45GO95257 159 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 ANGPTL1O95841 491 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 AFF3P51826 1226 aaKnown RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 SIM1P81133 766 aaPredicted RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 IL5RAQ01344 420 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 PUM1Q14671 1186 aaKnown RBP eCLIP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 CYP27C1Q4G0S4 372 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 ATAD3BQ5T9A4 648 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 DCDC5Q6ZRR9 648 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 SLC16A12Q6ZSM3 486 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 SLC15A4Q8N697 577 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 PHF10Q8WUB8 498 aaKnown RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 CHPT1Q8WUD6 406 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 APOBEC4Q8WW27 367 aaKnown RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 OR7D2Q96RA2 312 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 APOL4Q9BPW4 351 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 DGCR6LQ9BY27 220 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 ACTRT3Q9BYD9 372 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 RIBC2Q9H4K1 309 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 IL21RQ9HBE5 538 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 ANKHQ9HCJ1 492 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 CHCHD3Q9NX63 227 aaKnown RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 MRPS2Q9Y399 296 aaKnown RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 SLC9B1P1A6NJY1 282 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 MRPS14O60783 128 aaKnown RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 CSNK1EP49674 416 aaKnown RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 EMX1Q04741 257 aaPredicted RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 NPRL3Q12980 569 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 RAPSNQ13702 412 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 MCATQ8IVS2 390 aaKnown RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 DEFB123Q8N688 67 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 GPR32P1Q8NGA4 272 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 OR10G2Q8NGC3 310 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 OR4C15Q8NGM1 316 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 KAT2AQ92830 837 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 YIPF4Q9BSR8 244 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 CCDC90BQ9GZT6 254 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 RAB33BQ9H082 229 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 DUSP21Q9H596 190 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 ACER3Q9NUN7 267 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 PAK1IP1Q9NWT1 392 aaPredicted RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 SCN3BQ9NY72 215 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 ERGIC3Q9Y282 383 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 GON4LQ3T8J9 2241 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 CCDC88CQ9P219 2028 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 GIMAP1-GIMAP5A0A087WTJ2 511 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 C19orf67A6NJJ6 358 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 BCAT2O15382 392 aaPredicted RBP14.36□□□□□ -0.11
SF3B4-201ENST00000271628 DCNP07585 359 aaKnown RBP14.36□□□□□ -0.11
SF3B4-201ENST00000271628 OCM2P0CE71 109 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 OCMP0CE72 109 aaPredicted RBP14.36□□□□□ -0.11
SF3B4-201ENST00000271628 CPMP14384 443 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 BCKDHBP21953 392 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 PTGER1P34995 402 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 GP2P55259 537 aaKnown RBP14.36□□□□□ -0.11
SF3B4-201ENST00000271628 OLR1P78380 273 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 OCA2Q04671 838 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 CTF1Q16619 201 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 NDUFA9Q16795 377 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 C14orf28Q4W4Y0 310 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 GPAT3Q53EU6 434 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 COLEC12Q5KU26 742 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 PRSS41Q7RTY9 318 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 TSPYL5Q86VY4 417 aaPredicted RBP14.36□□□□□ -0.11
SF3B4-201ENST00000271628 CA13Q8N1Q1 262 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 OR2L13Q8N349 312 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 DNAJC22Q8N4W6 341 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 OR52J3Q8NH60 311 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 ADAMTS15Q8TE58 950 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 GIMAP5Q96F15 307 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 C16orf58Q96GQ5 468 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 FAM210AQ96ND0 272 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 MS4A4EQ96PG1 132 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 FEVQ99581 238 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 MAP3K3Q99759 626 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 PSD2Q9BQI7 771 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 ZNF556Q9HAH1 456 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 KCND3Q9UK17 655 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 NDRG4Q9ULP0 352 aaKnown RBP14.36□□□□□ -0.11
SF3B4-201ENST00000271628 CLCA2Q9UQC9 943 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 POFUT2Q9Y2G5 429 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 HCN4Q9Y3Q4 1203 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 GMPPBQ9Y5P6 360 aa14.36□□□□□ -0.11
SF3B4-201ENST00000271628 ARRDC5A6NEK1 342 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 ZNF860A6NHJ4 632 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 J3KTA2 159 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 CYR61O00622 381 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 CASC3O15234 703 aaKnown RBP14.35□□□□□ -0.11
SF3B4-201ENST00000271628 SLC22A1O15245 554 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 DNAJB6O75190 326 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 INMTO95050 263 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 GPR75O95800 540 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 RECKO95980 971 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 ATP1B1P05026 303 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 IFI6P09912 130 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 LIMS1P48059 325 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 MAN2A2P49641 1150 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 EPHA4P54764 986 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 RAB38P57729 211 aa14.35□□□□□ -0.11
SF3B4-201ENST00000271628 PIGFQ07326 219 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms