RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 VCANP13611 3396 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 MEN1O00255 615 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 SEMA3DO95025 777 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 RECKO95980 971 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 FGBP02675 491 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 SOX18P35713 384 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 VIPR2P41587 438 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 KCNJ5P48544 419 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 DCDC1P59894 354 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 UNC5DQ6UXZ4 953 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 VN1R5Q7Z5H4 357 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 NUDT13Q86X67 352 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 ZNF547Q8IVP9 402 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 SLC30A8Q8IWU4 369 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 OR8K5Q8NH50 307 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 CXorf40AQ8TE69 158 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 UFD1Q92890 307 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 NEURL3Q96EH8 262 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 SLC6A18Q96N87 628 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 WACQ9BTA9 647 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 DPH7Q9BTV6 452 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 SGPP1Q9BX95 441 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 ZNF717Q9BY31 904 aaPredicted RBP11.94□□□□□ -0.5
LIG1-201ENST00000263274 PLA2G12AQ9BZM1 189 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 C3orf14Q9HBI5 128 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 PTGFRNQ9P2B2 879 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 A0A075B6Q4 140 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 HYKKA2RU49 373 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 FAM183AA6NL82 134 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 SMLR1H3BR10 107 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 ERI3O43414 337 aaKnown RBP11.94□□□□□ -0.5
LIG1-201ENST00000263274 HPGDSO60760 199 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 CTSAP10619 480 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 ACP5P13686 325 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 NTSP30990 170 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 CD79BP40259 229 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 IL12RB1P42701 662 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 GPR4P46093 362 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 C21orf58P58505 322 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 RPS7P62081 194 aaKnown RBP11.94□□□□□ -0.5
LIG1-201ENST00000263274 PDE7AQ13946 482 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 NDUFAF5Q5TEU4 345 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 MEDAGQ5VYS4 303 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 TMEM107Q6UX40 140 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 Q8N402 240 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 PHF21AQ96BD5 680 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 GPA33Q99795 319 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 SRRQ9GZT4 340 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 NEUROD4Q9HD90 331 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 NTNG1Q9Y2I2 539 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 V9GYH0 126 aa11.94□□□□□ -0.5
LIG1-201ENST00000263274 ARHGEF9O43307 516 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 B4GALT2O60909 372 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 KLHL18O94889 574 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ALX3O95076 343 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SLC35G4P0C7Q5 338 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 CCR8P51685 355 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SMSP52788 366 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 CDH11P55287 796 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 KLHL12Q53G59 568 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SLC35F1Q5T1Q4 408 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 LCN1P1Q5VSP4 162 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 FAM46CQ5VWP2 391 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 CNKSR3Q6P9H4 555 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 RGMAQ96B86 450 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 C12orf66Q96MD2 445 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ZNF582Q96NG8 517 aaPredicted RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 FCRL4Q96PJ5 515 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SLC38A2Q96QD8 506 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 KCNK6Q9Y257 313 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 MRPS7Q9Y2R9 242 aaKnown RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 TRBV23OR9-2A0A075B6M9 112 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 TBC1D3BA6NDS4 549 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 NDUFS4O43181 175 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 LCMT2O60294 686 aaKnown RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 PRNPP04156 253 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 HMGN2P05204 90 aaKnown RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 CSF3P09919 207 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 MTNR1AP48039 350 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SLC9A3P48764 834 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 MLLT11Q13015 90 aaPredicted RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 DHCR24Q15392 516 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ZNF311Q5JNZ3 666 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ZNF770Q6IQ21 691 aaPredicted RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 COMTD1Q86VU5 262 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ARRDC3Q96B67 414 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 ZG16BQ96DA0 208 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 LMLNQ96KR4 655 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 QRFPRQ96P65 431 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 RSPO3Q9BXY4 272 aaPredicted RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 SAP130Q9H0E3 1048 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SLC25A19Q9HC21 320 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 TEKT2Q9UIF3 430 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 MRPS23Q9Y3D9 190 aaKnown RBP11.93□□□□□ -0.5
LIG1-201ENST00000263274 OR1A2Q9Y585 309 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 CSNK1G3Q9Y6M4 447 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 FRMPD3Q5JV73 1810 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SNTNA6NMZ2 147 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 RGS13O14921 159 aa11.93□□□□□ -0.5
LIG1-201ENST00000263274 SLC6A11P48066 632 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms