RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 KCNE3Q9Y6H6 103 aa12.15□□□□□ -0.46
SPTLC1-201ENST00000262554 DSPPQ9NZW4 1301 aa12.15□□□□□ -0.46
SPTLC1-201ENST00000262554 UNC80Q8N2C7 3258 aa12.15□□□□□ -0.47
SPTLC1-201ENST00000262554 SH3PXD2BA1X283 911 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 GABARAPO95166 117 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 ZBTB11O95625 1053 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 AGR2O95994 175 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 EIF2S1P05198 315 aaKnown RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 CDK1P06493 297 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 ALOX12P18054 663 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 POU3F3P20264 500 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 BLKP51451 505 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 PIN1Q13526 163 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 ZNF311Q5JNZ3 666 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 MANEAQ5SRI9 462 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 UBE2UQ5VVX9 321 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 TMEM236Q5W0B7 351 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 PTCHD4Q6ZW05 846 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 COMTD1Q86VU5 262 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 FAM46DQ8NEK8 389 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 ADAMTS15Q8TE58 950 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 GGHQ92820 318 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 PRRC1Q96M27 445 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 FUZQ9BT04 418 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 ANKRA2Q9H9E1 313 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 NPDC1Q9NQX5 325 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 CLN6Q9NWW5 311 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 GIN1Q9NXP7 522 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 WSB2Q9NYS7 404 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 NTMQ9P121 344 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 REV1Q9UBZ9 1251 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SLC22A7Q9Y694 548 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SPACA6W5XKT8 324 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 A0A1B0GVG6 124 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 A0A1W2PPC4 97 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SH3D21A4FU49 640 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SYT5O00445 386 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SLC22A1O15245 554 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 MBTPS2O43462 519 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 NME6O75414 186 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SLITRK5O94991 958 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 CELA2BP08218 269 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SRFP11831 508 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 PVRP15151 417 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 NR4A1P22736 598 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 CNR2P34972 360 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 LSSP48449 732 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 ENTPD1P49961 510 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SNRPNP63162 240 aaKnown RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SIM1P81133 766 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 TARDBPQ13148 414 aaKnown RBP eCLIP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 ILKQ13418 452 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SMAD4Q13485 552 aaKnown RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 AQP6Q13520 282 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SPCS2Q15005 226 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 TBCEQ15813 527 aaPredicted RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 FAM214AQ32MH5 1076 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SZT2Q5T011 3432 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 ARMC6Q6NXE6 501 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 PGBD2Q6P3X8 592 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 PODNL1Q6PEZ8 512 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 USP53Q70EK8 1073 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 RNF44Q7L0R7 432 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SYT13Q7L8C5 426 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 HMGN2P46Q86SG4 172 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 P2RY8Q86VZ1 359 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 OOSP2Q86WS3 158 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 CROCCP3Q8IVE0 287 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 RBM12BQ8IXT5 1001 aaKnown RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 STX19Q8N4C7 294 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 FRMD1Q8N878 549 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 OR7G2Q8NG99 324 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 OR6T1Q8NGN1 323 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 FAM174AQ8TBP5 190 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SLC7A13Q8TCU3 470 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 NR4A3Q92570 626 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 GIMAP5Q96F15 307 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 KLHDC7BQ96G42 594 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 POLR2J3Q9H1A7 115 aaKnown RBP12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SLC38A1Q9H2H9 487 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 AMBNQ9NP70 447 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 NECTIN3Q9NQS3 549 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 SLC2A4RGQ9NR83 387 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 GPR27Q9NS67 375 aa12.14□□□□□ -0.47
SPTLC1-201ENST00000262554 CCDC85CA6NKD9 419 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 H3BN98 237 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 CLPXO76031 633 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 EPPINO95925 133 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 LCKP06239 509 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 CPMP14384 443 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 NUDT6P53370 316 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 HHEXQ03014 270 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 CHRNEQ04844 493 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 NDUFA9Q16795 377 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 LEXMQ3ZCV2 418 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 C6orf132Q5T0Z8 1188 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 AP1ARQ63HQ0 302 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 MFSD12Q6NUT3 480 aa12.13□□□□□ -0.47
SPTLC1-201ENST00000262554 CDC73Q6P1J9 531 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms