RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 KLF10Q13118 480 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ARHGAP11AQ6P4F7 1023 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 TMED4Q7Z7H5 227 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ZSWIM9Q86XI8 627 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 RNF130Q86XS8 419 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 NPAS3Q8IXF0 933 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 LGI4Q8N135 537 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ASCC1Q8N9N2 400 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 OR56B2PQ8NGI1 322 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 DUSP9Q99956 384 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 VRK1Q99986 396 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 MINDY3Q9H8M7 445 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 NLE1Q9NVX2 485 aaPredicted RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 KIAA1456Q9P272 454 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PHIPQ8WWQ0 1821 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 RNF212BA8MTL3 300 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 TSPAN4O14817 238 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 LSM1O15116 133 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PRAMEF11O60813 436 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CBX6O95503 412 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 C8BP07358 591 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PRPH2P23942 346 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CSNK1A1P48729 337 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 KIR2DS3Q14952 304 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ARL6IP1Q15041 203 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 GRK1Q15835 563 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 MANEALQ5VSG8 457 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PAQR3Q6TCH7 311 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 MINDY1Q8N5J2 469 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 OR5K1Q8NHB7 308 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CORO2AQ92828 525 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 TAAR8Q969N4 342 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 DNAJC19Q96DA6 116 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ZFYVE21Q9BQ24 234 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 DERL2Q9GZP9 239 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 CHRDQ9H2X0 955 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 UNKLQ9H9P5 680 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 HEBP1Q9NRV9 189 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 KCND1Q9NSA2 647 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PNPOQ9NVS9 261 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 GPR83Q9NYM4 423 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ZIM2Q9NZV7 527 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 DLGAP4Q9Y2H0 992 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 DDX60Q8IY21 1712 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 RGPD2P0DJD1 1756 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 C17orf113A0A1B0GUU1 675 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 C17orf105B2RV13 164 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 GABARAPH6UMI1 98 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PEX10O60683 326 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 GABARAPO95166 117 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ITGB1P05556 798 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PSKH1P11801 424 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 GABRR1P24046 479 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 GPX6P59796 221 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SMAD4Q13485 552 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 SCCPDHQ8NBX0 429 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 OR13C4Q8NGS5 318 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 OR4K15Q8NH41 348 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 MRPL38Q96DV4 380 aaKnown RBP5.85□□□□□ -1.47
SCN1A-217ENST00000637988 ACTR10Q9NZ32 417 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 B3GAT1Q9P2W7 334 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 PADI1Q9ULC6 663 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 FADS3Q9Y5Q0 445 aa5.85□□□□□ -1.47
SCN1A-217ENST00000637988 UNC119BA6NIH7 251 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SCAF4O95104 1147 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TPOP07202 933 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CRABP1P29762 137 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 P2RY2P41231 377 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 PRPS1P60891 318 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 RAB33AQ14088 237 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 VMACQ2NL98 169 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM107Q6UX40 140 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CLEC17AQ6ZS10 378 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SHFQ7M4L6 423 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ABHD11Q8NFV4 315 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TCTN2Q96GX1 697 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 METTL2AQ96IZ6 378 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 B4GALT6Q9UBX8 382 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CNOT11Q9UKZ1 510 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 POLR2AP24928 1970 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ASXL3Q9C0F0 2248 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 A8MVM7 634 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 H3BSH0 61 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 AQP9O43315 295 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 NADKO95544 446 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 IMPDH1P20839 514 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ITGB7P26010 798 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ACVRL1P37023 503 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 PSMA6P60900 246 aaKnown RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TEKQ02763 1124 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 ARL13AQ5H913 290 aaPredicted RBP5.84□□□□□ -1.47
SCN1A-217ENST00000637988 AWAT2Q6E213 333 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 BAIAP2L2Q6UXY1 529 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 KCTD9Q7L273 389 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TMIEQ8NEW7 156 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 APOOQ9BUR5 198 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 CHIAQ9BZP6 476 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 TM9SF3Q9HD45 589 aa5.84□□□□□ -1.47
SCN1A-217ENST00000637988 SLC39A9Q9NUM3 307 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms