RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PTGR1Q14914 329 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 SMU1Q2TAY7 513 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 ZNF324BQ6AW86 544 aaPredicted RBP16.51■□□□□ 0.23
CLN3-247ENST00000636351 H3F3CQ6NXT2 135 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 SLC29A4Q7RTT9 530 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 R3HCC1LQ7Z5L2 792 aaKnown RBP16.51■□□□□ 0.23
CLN3-247ENST00000636351 FAM9CQ8IZT9 166 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 OR9A2Q8NGT5 310 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 ZNF681Q96N22 645 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLN3-247ENST00000636351 WDR55Q9H6Y2 383 aaPredicted RBP16.51■□□□□ 0.23
CLN3-247ENST00000636351 USH1CQ9Y6N9 552 aa16.51■□□□□ 0.23
CLN3-247ENST00000636351 GABRR3A8MPY1 467 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 SCAMP2O15127 329 aaKnown RBP16.5■□□□□ 0.23
CLN3-247ENST00000636351 PRKNO60260 465 aaPredicted RBP16.5■□□□□ 0.23
CLN3-247ENST00000636351 MAN1A2O60476 641 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 DIAPH2O60879 1101 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 IGKV3-11P04433 115 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 PCSK2P16519 638 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 MPIP34949 423 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 RPL3P39023 403 aaKnown RBP16.5■□□□□ 0.23
CLN3-247ENST00000636351 RNF4P78317 190 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 OC90Q02509 493 aaPredicted RBP16.5■□□□□ 0.23
CLN3-247ENST00000636351 FAM111BQ6SJ93 734 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 LGI4Q8N135 537 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 OR5L2Q8NGL0 311 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 NR4A3Q92570 626 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 NPAS2Q99743 824 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 LIN28AQ9H9Z2 209 aaKnown RBP16.5■□□□□ 0.23
CLN3-247ENST00000636351 ANKRD10Q9NXR5 420 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 MAT2BQ9NZL9 334 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 BCAP29Q9UHQ4 241 aa16.5■□□□□ 0.23
CLN3-247ENST00000636351 EXO1Q9UQ84 846 aaKnown RBP16.5■□□□□ 0.23
CLN3-247ENST00000636351 DIDO1Q9BTC0 2240 aaKnown RBP16.5■□□□□ 0.23
CLN3-247ENST00000636351 TRAV17A0A0B4J275 112 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 OR5H15A6NDH6 313 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 WWP2O00308 870 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 DIO3P55073 304 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 MLF1P58340 268 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 MRPS35P82673 323 aaKnown RBP16.49■□□□□ 0.23
CLN3-247ENST00000636351 INAQ16352 499 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 PRICKLE4Q2TBC4 344 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 SLC9B1Q4ZJI4 515 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 GFRALQ6UXV0 394 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 C16orf47Q6ZP98 133 aaPredicted RBP16.49■□□□□ 0.23
CLN3-247ENST00000636351 MCEMP1Q8IX19 187 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 C9orf40Q8IXQ3 194 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 OR8K3Q8NH51 312 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 ZFP28Q8NHY6 868 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 SUN3Q8TAQ9 357 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 HAS2Q92819 552 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 KAT2AQ92830 837 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 RELTQ969Z4 430 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 CIDECQ96AQ7 238 aaPredicted RBP16.49■□□□□ 0.23
CLN3-247ENST00000636351 UTP23Q9BRU9 249 aaKnown RBP16.49■□□□□ 0.23
CLN3-247ENST00000636351 ASIC5Q9NY37 505 aa16.49■□□□□ 0.23
CLN3-247ENST00000636351 TEP1Q99973 2627 aaKnown RBP16.49■□□□□ 0.23
CLN3-247ENST00000636351 CPAMD8Q8IZJ3 1885 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 OR6C76A6NM76 312 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 MYO1GB0I1T2 1018 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 ITGA10O75578 1167 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 PRPS1L1P21108 318 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 ELAVL4P26378 380 aaKnown RBP16.48■□□□□ 0.23
CLN3-247ENST00000636351 GPC1P35052 558 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 SSR4P51571 173 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 SLC37A1P57057 533 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 SRSF11Q05519 484 aaKnown RBP16.48■□□□□ 0.23
CLN3-247ENST00000636351 MAP4K2Q12851 820 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 HSPB3Q12988 150 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 PDE7AQ13946 482 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 EXOSC7Q15024 291 aaKnown RBP16.48■□□□□ 0.23
CLN3-247ENST00000636351 PRSS53Q2L4Q9 553 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 ZNF385BQ569K4 471 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 ZNF628Q5EBL2 1059 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 HLA-DQA1Q5Y7H0 255 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 RGS9BPQ6ZS82 235 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 ACAD11Q709F0 780 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 LARP4Q71RC2 724 aaKnown RBP eCLIP16.48■□□□□ 0.231e-6■□□□□ 8.2
CLN3-247ENST00000636351 MAVSQ7Z434 540 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 LRRC34Q8IZ02 419 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 TMEM156Q8N614 296 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 KRTCAP2Q8N6L1 136 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 OR7G1Q8NGA0 311 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 OR7A2PQ8NGA2 310 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 ZNF675Q8TD23 568 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 MTERF3Q96E29 417 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 ZBED6CLQ96FA7 236 aaPredicted RBP16.48■□□□□ 0.23
CLN3-247ENST00000636351 ZNF764Q96H86 408 aaPredicted RBP16.48■□□□□ 0.23
CLN3-247ENST00000636351 PRPF18Q99633 342 aaKnown RBP16.48■□□□□ 0.23
CLN3-247ENST00000636351 DPY30Q9C005 99 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 RNF32Q9H0A6 362 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 OR10A5Q9H207 317 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 ATAD3AQ9NVI7 634 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 TAS2R7Q9NYW3 318 aa16.48■□□□□ 0.23
CLN3-247ENST00000636351 PRAMEF2O60811 474 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 OR2J2O76002 312 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 UNC5CO95185 931 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 CLPSP04118 112 aa16.47■□□□□ 0.23
CLN3-247ENST00000636351 EFNA1P20827 205 aaPredicted RBP16.47■□□□□ 0.23
CLN3-247ENST00000636351 GRNP28799 593 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms