RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 DNAJA1P31689 397 aaKnown RBP16.87■□□□□ 0.29
CLN3-241ENST00000635861 MASP1P48740 699 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ASCL1P50553 236 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 CDK9P50750 372 aaKnown RBP16.87■□□□□ 0.29
CLN3-241ENST00000635861 FBXW4P57775 412 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 SLC7A5Q01650 507 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ACSF3Q4G176 576 aaPredicted RBP16.87■□□□□ 0.29
CLN3-241ENST00000635861 GLE1Q53GS7 698 aaKnown RBP16.87■□□□□ 0.29
CLN3-241ENST00000635861 CCNYL2Q5T2Q4 361 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 PLD6Q8N2A8 252 aaKnown RBP16.87■□□□□ 0.29
CLN3-241ENST00000635861 DOK4Q8TEW6 326 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 NTNG2Q96CW9 530 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 PHF21BQ96EK2 531 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 LRRC1Q9BTT6 524 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ELOVL6Q9H5J4 265 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 NMRK1Q9NWW6 199 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 XPR1Q9UBH6 696 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 PSME2Q9UL46 239 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 C15orf41Q9Y2V0 281 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 PCDHA9Q9Y5H5 950 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 PRRC2AP48634 2157 aaKnown RBP16.87■□□□□ 0.29
CLN3-241ENST00000635861 CTAG2O75638 210 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 OTCP00480 354 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 IL2RAP01589 272 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ATP1B1P05026 303 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 KLK1P06870 262 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 CT62P0C5K7 136 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 RHOXF2BP0C7M4 288 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 NT5EP21589 574 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 GPX3P22352 226 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ABCD3P28288 659 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 CASP3P42574 277 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 KIR2DL3P43628 341 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ART1P52961 327 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 MAPK12P53778 367 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 MAP4K2Q12851 820 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 VASNQ6EMK4 673 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 SLC48A1Q6P1K1 146 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 SEM1Q6ZVN7 128 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 MILR1Q7Z6M3 343 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 VWA5B2Q8N398 1253 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 TIMP4Q99727 224 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 MRPL57Q9BQC6 102 aaKnown RBP16.87■□□□□ 0.29
CLN3-241ENST00000635861 C1QTNF3Q9BXJ4 246 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ZBTB26Q9HCK0 441 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 DNAJB12Q9NXW2 375 aaKnown RBP16.87■□□□□ 0.29
CLN3-241ENST00000635861 FAM53CQ9NYF3 392 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 FETUBQ9UGM5 382 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ZNF180Q9UJW8 692 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 SNX6Q9UNH7 406 aa16.87■□□□□ 0.29
CLN3-241ENST00000635861 ABCA4P78363 2273 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 FAM221AA4D161 298 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 ACOX3O15254 700 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 TRAPPC6AO75865 159 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 RPS17P08708 135 aaKnown RBP16.86■□□□□ 0.29
CLN3-241ENST00000635861 TRPC1P48995 793 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 DCAF7P61962 342 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 TRA2BP62995 288 aaKnown RBP16.86■□□□□ 0.29
CLN3-241ENST00000635861 SNTA1Q13424 505 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 FNDC7Q5VTL7 733 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 NSUN5P2Q63ZY6 315 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 NUP54Q7Z3B4 507 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 OR4F6Q8NGB9 312 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 RNASE6Q93091 150 aaKnown RBP16.86■□□□□ 0.29
CLN3-241ENST00000635861 UCN3Q969E3 161 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 FOXC2Q99958 501 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 SH3GL2Q99962 352 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 MRPL1Q9BYD6 325 aaKnown RBP16.86■□□□□ 0.29
CLN3-241ENST00000635861 MRPL46Q9H2W6 279 aaKnown RBP16.86■□□□□ 0.29
CLN3-241ENST00000635861 ZNF358Q9NW07 568 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 CES1P1Q9UKY3 287 aa16.86■□□□□ 0.29
CLN3-241ENST00000635861 KIAA1549Q9HCM3 1950 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 MED12LQ86YW9 2145 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 A0A1W2PS29 197 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 CD8B2A6NJW9 211 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 PPM1BO75688 479 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 LRATO95237 230 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 ABCB1P08183 1280 aaPredicted RBP16.85■□□□□ 0.29
CLN3-241ENST00000635861 CSNK2A2P19784 350 aaPredicted RBP16.85■□□□□ 0.29
CLN3-241ENST00000635861 S1PR1P21453 382 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 GCKP35557 465 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 PRICKLE4Q2TBC4 344 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 FLYWCH1Q4VC44 716 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 TIGD3Q6B0B8 471 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 SLC30A6Q6NXT4 461 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 COMMD6Q7Z4G1 85 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 RELL2Q8NC24 303 aaPredicted RBP16.85■□□□□ 0.29
CLN3-241ENST00000635861 FAM222BQ8WU58 562 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 DTNBP1Q96EV8 351 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 PAFAH2Q99487 392 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 FAIM2Q9BWQ8 316 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 POLDIP3Q9BY77 421 aaKnown RBP16.85■□□□□ 0.29
CLN3-241ENST00000635861 CXXC4Q9H2H0 198 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 CDC42EP4Q9H3Q1 356 aaKnown RBP16.85■□□□□ 0.29
CLN3-241ENST00000635861 TRPS1Q9UHF7 1281 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 ZNF639Q9UID6 485 aa16.85■□□□□ 0.29
CLN3-241ENST00000635861 NIPBLQ6KC79 2804 aaeCLIP16.84■□□□□ 0.29
CLN3-241ENST00000635861 MED12Q93074 2177 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 ERLIN1O75477 346 aa16.84■□□□□ 0.29
CLN3-241ENST00000635861 GOSR1O95249 250 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms