RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 HMGA2P52926 109 aa10□□□□□ -0.81
CUX1-221ENST00000622516 ST3GAL4Q11206 333 aa10□□□□□ -0.81
CUX1-221ENST00000622516 DCST1Q5T197 706 aa10□□□□□ -0.81
CUX1-221ENST00000622516 SLC48A1Q6P1K1 146 aa10□□□□□ -0.81
CUX1-221ENST00000622516 PRSS48Q7RTY5 328 aa10□□□□□ -0.81
CUX1-221ENST00000622516 P2RY8Q86VZ1 359 aa10□□□□□ -0.81
CUX1-221ENST00000622516 NRROSQ86YC3 692 aa10□□□□□ -0.81
CUX1-221ENST00000622516 TRIM48Q8IWZ4 208 aa10□□□□□ -0.81
CUX1-221ENST00000622516 FAM160A2Q8N612 972 aaPredicted RBP10□□□□□ -0.81
CUX1-221ENST00000622516 MFSD9Q8NBP5 474 aa10□□□□□ -0.81
CUX1-221ENST00000622516 RNF167Q9H6Y7 350 aa10□□□□□ -0.81
CUX1-221ENST00000622516 OR6C2Q9NZP2 312 aa10□□□□□ -0.81
CUX1-221ENST00000622516 CES1P1Q9UKY3 287 aa10□□□□□ -0.81
CUX1-221ENST00000622516 SNX7Q9UNH6 387 aa10□□□□□ -0.81
CUX1-221ENST00000622516 WBP11Q9Y2W2 641 aaKnown RBP10□□□□□ -0.81
CUX1-221ENST00000622516 PCDHGB1Q9Y5G3 927 aa10□□□□□ -0.81
CUX1-221ENST00000622516 SEC16AO15027 2179 aa10□□□□□ -0.81
CUX1-221ENST00000622516 E9PQ18 207 aa10□□□□□ -0.81
CUX1-221ENST00000622516 SERPINB7O75635 380 aa10□□□□□ -0.81
CUX1-221ENST00000622516 H1F0P07305 194 aaKnown RBP10□□□□□ -0.81
CUX1-221ENST00000622516 F3P13726 295 aa10□□□□□ -0.81
CUX1-221ENST00000622516 IGFBP4P22692 258 aa10□□□□□ -0.81
CUX1-221ENST00000622516 ABATP80404 500 aa10□□□□□ -0.81
CUX1-221ENST00000622516 CHRNEQ04844 493 aa10□□□□□ -0.81
CUX1-221ENST00000622516 SRSF5Q13243 272 aaKnown RBP10□□□□□ -0.81
CUX1-221ENST00000622516 ELOAQ14241 798 aaKnown RBP10□□□□□ -0.81
CUX1-221ENST00000622516 SYT6Q5T7P8 510 aaPredicted RBP10□□□□□ -0.81
CUX1-221ENST00000622516 MRM1Q6IN84 353 aaKnown RBP10□□□□□ -0.81
CUX1-221ENST00000622516 PTCHD4Q6ZW05 846 aa10□□□□□ -0.81
CUX1-221ENST00000622516 SLCO6A1Q86UG4 719 aa10□□□□□ -0.81
CUX1-221ENST00000622516 VRK2Q86Y07 508 aa10□□□□□ -0.81
CUX1-221ENST00000622516 SLC22A18ASQ8N1D0 253 aa10□□□□□ -0.81
CUX1-221ENST00000622516 SLC44A3Q8N4M1 653 aa10□□□□□ -0.81
CUX1-221ENST00000622516 DNAJC22Q8N4W6 341 aa10□□□□□ -0.81
CUX1-221ENST00000622516 NUP43Q8NFH3 380 aa10□□□□□ -0.81
CUX1-221ENST00000622516 B3GNT7Q8NFL0 401 aa10□□□□□ -0.81
CUX1-221ENST00000622516 OR2A14Q96R47 310 aa10□□□□□ -0.81
CUX1-221ENST00000622516 PHOX2BQ99453 314 aa10□□□□□ -0.81
CUX1-221ENST00000622516 PSORS1C1Q9UIG5 152 aa10□□□□□ -0.81
CUX1-221ENST00000622516 CYP8B1Q9UNU6 501 aa10□□□□□ -0.81
CUX1-221ENST00000622516 NTNG1Q9Y2I2 539 aa10□□□□□ -0.81
CUX1-221ENST00000622516 GPR55Q9Y2T6 319 aaPredicted RBP10□□□□□ -0.81
CUX1-221ENST00000622516 CLCA1A8K7I4 914 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 M0R3G1 203 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 HCRTR1O43613 425 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 CLPXO76031 633 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 CTSBP07858 339 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 UGT2B7P16662 529 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 CSNK2A2P19784 350 aaPredicted RBP9.99□□□□□ -0.81
CUX1-221ENST00000622516 ACVR2AP27037 513 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 PPP2R1BP30154 601 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 LSSP48449 732 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 CRISP1P54107 249 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 FAM111BQ6SJ93 734 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 ASPGQ86U10 573 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 PAQR7Q86WK9 346 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 STX19Q8N4C7 294 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 TBC1D19Q8N5T2 526 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 OR5T3Q8NGG3 340 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 PSMA8Q8TAA3 256 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 YIPF6Q96EC8 236 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 PLGRKTQ9HBL7 147 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 KCND3Q9UK17 655 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 FBXO9Q9UK97 447 aaPredicted RBP9.99□□□□□ -0.81
CUX1-221ENST00000622516 MKLN1Q9UL63 735 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 A4GNTQ9UNA3 340 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 GPC6Q9Y625 555 aaPredicted RBP9.99□□□□□ -0.81
CUX1-221ENST00000622516 LDB3O75112 727 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 PTHP01270 115 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 TYRP1P17643 537 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 GABRB1P18505 474 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 MPIP34949 423 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 OPRL1P41146 370 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 MLLT1Q03111 559 aaPredicted RBP9.99□□□□□ -0.81
CUX1-221ENST00000622516 DOC2BQ14184 412 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 PODNL1Q6PEZ8 512 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 CLIP4Q8N3C7 705 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 SLC16A11Q8NCK7 471 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 SLC9A6Q92581 669 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 PMM1Q92871 262 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 ELP4Q96EB1 424 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 GPA33Q99795 319 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 ZBTB20Q9HC78 741 aaPredicted RBP9.99□□□□□ -0.81
CUX1-221ENST00000622516 CAPN10Q9HC96 672 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 EHD3Q9NZN3 535 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 DNAJC27Q9NZQ0 273 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 HEBP2Q9Y5Z4 205 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 ZNF780BQ9Y6R6 833 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 LOC100506127A0A0U1RQW1 187 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 OR2A25A4D2G3 310 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 TMEM221A6NGB7 291 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 M0R082 166 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 UGT2B17O75795 530 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 PDE9AO76083 593 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 INHBBP09529 407 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 AVPR1BP47901 424 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 XKP51811 444 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 C21orf59P57076 290 aa9.99□□□□□ -0.81
CUX1-221ENST00000622516 STXBP1P61764 594 aaKnown RBP9.99□□□□□ -0.81
CUX1-221ENST00000622516 TRA2BP62995 288 aaKnown RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 118.1 ms