RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 SUN3Q8TAQ9 357 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 CNIH3Q8TBE1 160 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 TMIGD2Q96BF3 282 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 ZNF300Q96RE9 604 aaPredicted RBP9.35□□□□□ -0.91
VTA1-205ENST00000620996 NELL2Q99435 816 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 A4GALTQ9NPC4 353 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 ADAP2Q9NPF8 381 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 UCKL1Q9NWZ5 548 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 USE1Q9NZ43 259 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 HCN3Q9P1Z3 774 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 TMEFF2Q9UIK5 374 aaPredicted RBP9.35□□□□□ -0.91
VTA1-205ENST00000620996 SIT1Q9Y3P8 196 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 PCDHGA8Q9Y5G5 932 aa9.35□□□□□ -0.91
VTA1-205ENST00000620996 H3BSA7 217 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 EMC8O43402 210 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 GADD45GO95257 159 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 SEMG1P04279 462 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 NME1P15531 152 aaKnown RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 POU1F1P28069 291 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 RNF144AP50876 292 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 SH3BGRP55822 239 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 ESRRGP62508 458 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 PIGFQ07326 219 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 DMWDQ09019 674 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 CRB2Q5IJ48 1285 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 SLC30A8Q8IWU4 369 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 C19orf47Q8N9M1 422 aaKnown RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 PIK3C3Q8NEB9 887 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 OR9Q2Q8NGE9 314 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 OR9A4Q8NGU2 314 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 ZFPM2Q8WW38 1151 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 GUCD1Q96NT3 240 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 ZNF347Q96SE7 839 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 ZNF556Q9HAH1 456 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 ZSCAN32Q9NX65 697 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 TAS2R7Q9NYW3 318 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 DAPP1Q9UN19 280 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 PADI2Q9Y2J8 665 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 KCNE3Q9Y6H6 103 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 LAMA1P25391 3075 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 A0A0A6YYC8 382 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 I3L1I5 382 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 M0R3H8 397 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 TNFSF14O43557 240 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 AGXTP21549 392 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 FRKP42685 505 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 TSFMP43897 325 aaKnown RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 CRISP3P54108 245 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 GFERP55789 205 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 SRSF5Q13243 272 aaKnown RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 RAPSNQ13702 412 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 RFX4Q33E94 735 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 ATAD3BQ5T9A4 648 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 Q6ZPB1 254 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 RBM45Q8IUH3 476 aaKnown RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 SLC5A8Q8N695 610 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 Q8N9G6 341 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 PJA1Q8NG27 643 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 ADAMTS15Q8TE58 950 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 TBC1D20Q96BZ9 403 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 FEVQ99581 238 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 SEMA6CQ9H3T2 930 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 ANKHQ9HCJ1 492 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 LYVE1Q9Y5Y7 322 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 A0A1W2PPC1 479 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 FAM221BA6H8Z2 402 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 S100A1P23297 94 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 FMO3P31513 532 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 MLLT3P42568 568 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 DHPSP49366 369 aaPredicted RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 SEPHS1P49903 392 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 MAPK10P53779 464 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 HNRNPKP61978 463 aaKnown RBP eCLIP9.34□□□□□ -0.91
VTA1-205ENST00000620996 CD47Q08722 323 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 APOFQ13790 326 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 MCATQ8IVS2 390 aaKnown RBP9.34□□□□□ -0.91
VTA1-205ENST00000620996 SIMC1Q8NDZ2 872 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 ELP4Q96EB1 424 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 RDH12Q96NR8 316 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 OR7D2Q96RA2 312 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 PIP5K1AQ99755 562 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 POLR1BQ9H9Y6 1135 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 MUTYHQ9UIF7 546 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 PILRAQ9UKJ1 303 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 CES1P1Q9UKY3 287 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 POMT2Q9UKY4 750 aa9.34□□□□□ -0.91
VTA1-205ENST00000620996 A0A1B0GVT2 93 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 A0A1W2PR77 199 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 PRAMEF25A6NGN4 478 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 TMEM229AB2RXF0 380 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 PCDH17O14917 1159 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 OR10H2O60403 315 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 COL6A3P12111 3177 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 EPHA2P29317 976 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 IDH2P48735 452 aaKnown RBP9.33□□□□□ -0.92
VTA1-205ENST00000620996 ARL4DP49703 201 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 PCBP3P57721 371 aaKnown RBP9.33□□□□□ -0.92
VTA1-205ENST00000620996 ZP2Q05996 745 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 FAM111BQ6SJ93 734 aa9.33□□□□□ -0.92
VTA1-205ENST00000620996 PIWIL3Q7Z3Z3 882 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 87.9 ms