RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 EPHA2P29317 976 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 RPS5P46782 204 aaKnown RBP4.81□□□□□ -1.64
VPS13D-214ENST00000620676 TAS2R50P59544 299 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 OR2G6Q5TZ20 316 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 ALKBH2Q6NS38 261 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 TAPT1Q6NXT6 567 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 GPC2Q8N158 579 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 OR10R2Q8NGX6 335 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 ELOVL1Q9BW60 279 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 NEXMIFQ5QGS0 1516 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 CXorf65A6NEN9 183 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 PHOX2AO14813 284 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 OR10H2O60403 315 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 PRAMEF12O95522 483 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 PREPP48147 710 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 KCNJ3P48549 501 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 ZNF836Q6ZNA1 936 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 TMEM179BQ7Z7N9 219 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 SLC6A20Q9NP91 592 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 TRIM36Q9NQ86 728 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 ANKRD28O15084 1053 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 FLRT2O43155 660 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 HSD17B1P14061 328 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 SAXO2Q658L1 398 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 LRRC56Q8IYG6 542 aaPredicted RBP4.81□□□□□ -1.64
VPS13D-214ENST00000620676 VWDEQ8N2E2 1590 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 NIPA2Q8N8Q9 360 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 C9orf43Q8TAL5 461 aaPredicted RBP4.81□□□□□ -1.64
VPS13D-214ENST00000620676 CDCA5Q96FF9 252 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 TEX37Q96LM6 180 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 RAD9AQ99638 391 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 COLEC11Q9BWP8 271 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 CNIH4Q9P003 139 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 EXOSC1Q9Y3B2 195 aaKnown RBP4.81□□□□□ -1.64
VPS13D-214ENST00000620676 H3BRB1 525 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 ANXA8P13928 327 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 CPT2P23786 658 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 LEXMQ3ZCV2 418 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 GPR139Q6DWJ6 353 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 DCLRE1AQ6PJP8 1040 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 ZNF687Q8N1G0 1237 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 PROKR2Q8NFJ6 384 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 CIPCQ9C0C6 399 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 AMBRA1Q9C0C7 1298 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 LMAN2LQ9H0V9 348 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 NMUR1Q9HB89 426 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 ACOXLQ9NUZ1 547 aa4.81□□□□□ -1.64
VPS13D-214ENST00000620676 TMEM72A0PK05 275 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 WASH3PC4AMC7 463 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 HLA-DPB1P04440 258 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 AMY2AP04746 511 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 INHAP05111 366 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 NFYAP23511 347 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-214ENST00000620676 HRH2P25021 359 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 GRM5P41594 1212 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 ADAM5Q6NVV9 412 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 OR10Z1Q8NGY1 313 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 TERB2Q8NHR7 220 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 POFUT1Q9H488 388 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 A0A1W2PRB8 838 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 DOK2O60496 412 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 TMEM127O75204 238 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 LAMP1P11279 417 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 ACHEP22303 614 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 LCLAT1Q6UWP7 414 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 WDTC1Q8N5D0 677 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 MS4A15Q8N5U1 240 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 CLDN19Q8N6F1 224 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 THEM6Q8WUY1 208 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 GPR22Q99680 433 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 SULT4A1Q9BR01 284 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 PRR14Q9BWN1 585 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 ZFP57Q9NU63 452 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 NEURL4Q96JN8 1562 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 PXDNQ92626 1479 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 ZC3H12DA2A288 527 aaKnown RBP4.8□□□□□ -1.64
VPS13D-214ENST00000620676 ZNF16P17020 682 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-214ENST00000620676 HNF1AP20823 631 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 UBE2IP63279 158 aaKnown RBP4.8□□□□□ -1.64
VPS13D-214ENST00000620676 SF3A2Q15428 464 aaKnown RBP4.8□□□□□ -1.64
VPS13D-214ENST00000620676 CHRNA6Q15825 494 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 PRAMEF19Q5SWL8 479 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 DNERQ8NFT8 737 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 ATG101Q9BSB4 218 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 SMCO4Q9NRQ5 59 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 PPP4R1LQ9P1A2 415 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 ASXL3Q9C0F0 2248 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 TNFRSF10BO14763 440 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 SCN2BO60939 215 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 EGFP01133 1207 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 CDKN1CP49918 316 aaPredicted RBP4.8□□□□□ -1.64
VPS13D-214ENST00000620676 CDC20Q12834 499 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 MFSD13AQ14CX5 517 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 YIPF6Q96EC8 236 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 SAMD11Q96NU1 681 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 C3orf14Q9HBI5 128 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 ENTPD3O75355 529 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 MT-ND5P03915 603 aa4.8□□□□□ -1.64
VPS13D-214ENST00000620676 PKMP14618 531 aaKnown RBP4.8□□□□□ -1.64
VPS13D-214ENST00000620676 PRKXP51817 358 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 114.3 ms