RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GPR68Q15743 365 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.93□□□□□ -0.58e-7■□□□□ 9.2
LIG1-221ENST00000613670 FAM20CQ8IXL6 584 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 SIMC1Q8NDZ2 872 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 BEST4Q8NFU0 473 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 OR5AR1Q8NGP9 310 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 WDR20Q8TBZ3 569 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 RGMAQ96B86 450 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 CXorf40BQ96DE9 158 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 PAWRQ96IZ0 340 aaKnown RBP11.93□□□□□ -0.5
LIG1-221ENST00000613670 IFT27Q9BW83 186 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 ABCG4Q9H172 646 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 RC3H2Q9HBD1 1191 aaKnown RBP11.93□□□□□ -0.5
LIG1-221ENST00000613670 C1GALT1Q9NS00 363 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 NUDT15Q9NV35 164 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 NEUROG3Q9Y4Z2 214 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 MAU2Q9Y6X3 613 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 CKAP5Q14008 2032 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 POLR1CO15160 346 aaPredicted RBP11.93□□□□□ -0.5
LIG1-221ENST00000613670 CSF3P09919 207 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 DRD5P21918 477 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 MAPK9P45984 424 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 CCR8P51685 355 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 FAPQ12884 760 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 FAM129CQ86XR2 697 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 NLGN4YQ8NFZ3 816 aaPredicted RBP11.93□□□□□ -0.5
LIG1-221ENST00000613670 RFT1Q96AA3 541 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 SRRQ9GZT4 340 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 BTBD1Q9H0C5 482 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 SAP130Q9H0E3 1048 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 MGAT4AQ9UM21 535 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 EXOSC1Q9Y3B2 195 aaKnown RBP11.93□□□□□ -0.5
LIG1-221ENST00000613670 KCNE1BA0A087WTH5 132 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 REM1O75628 298 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 ALX3O95076 343 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 SOD2P04179 222 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 GNSP15586 552 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 STOMP27105 288 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 RPS5P46782 204 aaKnown RBP11.93□□□□□ -0.5
LIG1-221ENST00000613670 DSG2Q14126 1118 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 SLC9A5Q14940 896 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 BCL2A1Q16548 175 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 NDUFA9Q16795 377 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 ADGRD2Q7Z7M1 963 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 PIAS4Q8N2W9 510 aaPredicted RBP11.93□□□□□ -0.5
LIG1-221ENST00000613670 OR52I1Q8NGK6 324 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 NUS1Q96E22 293 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 SAMD11Q96NU1 681 aa11.93□□□□□ -0.5
LIG1-221ENST00000613670 FAM86C2PA6NEL3 165 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 TNFRSF10AO00220 468 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 TEX28O15482 410 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CA12O43570 354 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 LAMP2P13473 410 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 PRKCAP17252 672 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 PRR5P85299 388 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ILKQ13418 452 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 SEC23BQ15437 767 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 NTRK2Q16620 822 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 FLYWCH1Q4VC44 716 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ACSM5Q6NUN0 579 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CD99L2Q8TCZ2 262 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CCDC120Q96HB5 630 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 THSD1Q9NS62 852 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 RNF186Q9NXI6 227 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CXXC1Q9P0U4 656 aaPredicted RBP11.92□□□□□ -0.5
LIG1-221ENST00000613670 KLHL42Q9P2K6 505 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ICMTO60725 284 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 KHDRBS3O75525 346 aaKnown RBP11.92□□□□□ -0.5
LIG1-221ENST00000613670 ACP5P13686 325 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CBLP22681 906 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CAP1Q01518 475 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 WDR45BQ5MNZ6 344 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 SAXO2Q658L1 398 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CHMP1BQ7LBR1 199 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 KREMEN2Q8NCW0 462 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 SUSD6Q92537 303 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 TM9SF4Q92544 642 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ST6GAL2Q96JF0 529 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 MCHR1Q99705 422 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 MVB12BQ9H7P6 319 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ADAP2Q9NPF8 381 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 NPAP1Q9NZP6 1156 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 IRAK3Q9Y616 596 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 SBF1O95248 1867 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 PCP4L1A6NKN8 68 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 LATO43561 262 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 NPPBP16860 134 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 PSMB5P28074 263 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 GCGRP47871 477 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 CENPAP49450 140 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 LIM2P55344 173 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ST3GAL3Q11203 375 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 TCTN3Q6NUS6 607 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 TMEM107Q6UX40 140 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 NLRP8Q86W28 1048 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 MEIOBQ8N635 442 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 ZNF354BQ96LW1 612 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 MCCC1Q96RQ3 725 aaPredicted RBP11.92□□□□□ -0.5
LIG1-221ENST00000613670 DPAGT1Q9H3H5 408 aa11.92□□□□□ -0.5
LIG1-221ENST00000613670 SRRDQ9UH36 339 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms