RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 NAGAP17050 411 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 BMP7P18075 431 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 CSNK2A2P19784 350 aaPredicted RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 DRD5P21918 477 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 GPX3P22352 226 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 ABCD3P28288 659 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 ECHS1P30084 290 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 CEACAM8P31997 349 aaPredicted RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 TIMP3P35625 211 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 DEKP35659 375 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 FEN1P39748 380 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 TMED10P49755 219 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 CDK9P50750 372 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 RPP38P78345 283 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 CRYZQ08257 329 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 SNTB1Q13884 538 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 EXOSC7Q15024 291 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 GLE1Q53GS7 698 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 C6orf163Q5TEZ5 329 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 FAM219BQ5XKK7 198 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 VASNQ6EMK4 673 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 DESI1Q6ICB0 168 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 POMZP3Q6PJE2 187 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 TIFABQ6ZNK6 161 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 TAOK1Q7L7X3 1001 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 WDR53Q7Z5U6 358 aaPredicted RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 TMEM200AQ86VY9 491 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 PM20D2Q8IYS1 436 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 PRR22Q8IZ63 422 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 VWA5B2Q8N398 1253 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 NOA1Q8NC60 698 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 NAXEQ8NCW5 288 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 SIMC1Q8NDZ2 872 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 ADCY4Q8NFM4 1077 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 TNIP2Q8NFZ5 429 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 SELENOMQ8WWX9 145 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 CTHRC1Q96CG8 243 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 TMEM41AQ96HV5 264 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 C16orf45Q96MC5 204 aaPredicted RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 ZNF681Q96N22 645 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 BRINP2Q9C0B6 783 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 NXF5Q9H1B4 397 aaKnown RBP6.97□□□□□ -1.29
CUX1-219ENST00000606749 NMRK1Q9NWW6 199 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 MAT2BQ9NZL9 334 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 VPS29Q9UBQ0 182 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 BCAP29Q9UHQ4 241 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 PSME2Q9UL46 239 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 CFL2Q9Y281 166 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 DTX4Q9Y2E6 619 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 C15orf41Q9Y2V0 281 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 SLC6A5Q9Y345 797 aa6.97□□□□□ -1.29
CUX1-219ENST00000606749 FAM221AA4D161 298 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 C2orf72A6NCS6 295 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 GOLGA6L10A6NI86 522 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 MANBAO00462 879 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 GNB5O14775 395 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 DLX3O60479 287 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 ICOSLGO75144 302 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 CDH16O75309 829 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 CTAG2O75638 210 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 PPM1BO75688 479 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 SUPT7LO94864 414 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 OR4F21O95013 312 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 ZWINTO95229 277 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 CBX7O95931 251 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 IL2RAP01589 272 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 CHN1P15882 459 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 KRT15P19012 456 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 GCAP28676 217 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 PTPN6P29350 595 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 DNAJA1P31689 397 aaKnown RBP6.96□□□□□ -1.3
CUX1-219ENST00000606749 PTGDSP41222 190 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 KIR2DL3P43628 341 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 MASP1P48740 699 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 EMDP50402 254 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 NAGLUP54802 743 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 WNT3P56703 355 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 RIPPLY3P57055 190 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 TRA2BP62995 288 aaKnown RBP6.96□□□□□ -1.3
CUX1-219ENST00000606749 CLCQ05315 142 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 DUSP2Q05923 314 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 TOMM20Q15388 145 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 SF3B4Q15427 424 aaKnown RBP eCLIP6.96□□□□□ -1.3
CUX1-219ENST00000606749 ACSF3Q4G176 576 aaPredicted RBP6.96□□□□□ -1.3
CUX1-219ENST00000606749 TRMT12Q53H54 448 aaKnown RBP6.96□□□□□ -1.3
CUX1-219ENST00000606749 EIPR1Q53HC9 387 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 UNC50Q53HI1 259 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 NHSL2Q5HYW2 709 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 WIPI1Q5MNZ9 446 aaPredicted RBP6.96□□□□□ -1.3
CUX1-219ENST00000606749 ZNF678Q5SXM1 525 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 TEX35Q5T0J7 233 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 LGSNQ5TDP6 509 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 NSUN5P2Q63ZY6 315 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 TIGD3Q6B0B8 471 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 SLC30A6Q6NXT4 461 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 FAM180BQ6P0A1 224 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 TMEM81Q6P7N7 255 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 NUP54Q7Z3B4 507 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 LACC1Q8IV20 430 aa6.96□□□□□ -1.3
CUX1-219ENST00000606749 PIP4P2Q8N4L2 257 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms