RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 NXF5Q9H1B4 397 aaKnown RBP12.03□□□□□ -0.48
RPS28-204ENST00000602140 CXXC4Q9H2H0 198 aa12.03□□□□□ -0.48
RPS28-204ENST00000602140 EPB41L4BQ9H329 900 aa12.03□□□□□ -0.48
RPS28-204ENST00000602140 ACSS3Q9H6R3 686 aa12.03□□□□□ -0.48
RPS28-204ENST00000602140 NINJ2Q9NZG7 142 aa12.03□□□□□ -0.48
RPS28-204ENST00000602140 XPR1Q9UBH6 696 aa12.03□□□□□ -0.48
RPS28-204ENST00000602140 MTRF1LQ9UGC7 380 aaKnown RBP12.03□□□□□ -0.48
RPS28-204ENST00000602140 PCTPQ9UKL6 214 aa12.03□□□□□ -0.48
RPS28-204ENST00000602140 DTX4Q9Y2E6 619 aa12.03□□□□□ -0.48
RPS28-204ENST00000602140 FAM221AA4D161 298 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 A6NNC1 897 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 SMIM24O75264 130 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 PPM1BO75688 479 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 ABCB1P08183 1280 aaPredicted RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 INHBAP08476 426 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 CD99P14209 185 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 BMP7P18075 431 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 DEKP35659 375 aaKnown RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 FEN1P39748 380 aaKnown RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 EXOSC7Q15024 291 aaKnown RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 SF3B4Q15427 424 aaKnown RBP eCLIP12.02□□□□□ -0.499e-7■■■□□ 18.8
RPS28-204ENST00000602140 CEBPEQ15744 281 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 PRICKLE4Q2TBC4 344 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 FBXL19-AS1Q494R0 122 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 NHSL2Q5HYW2 709 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 WIPI1Q5MNZ9 446 aaPredicted RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 DCST1Q5T197 706 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 C10orf62Q5T681 223 aaPredicted RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 TIGD3Q6B0B8 471 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 DESI1Q6ICB0 168 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 C8orf74Q6P047 294 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 SLC48A1Q6P1K1 146 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 RPS27LQ71UM5 84 aaKnown RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 COMMD6Q7Z4G1 85 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 MILR1Q7Z6M3 343 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 MMP21Q8N119 569 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 VWA5B2Q8N398 1253 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 OR4F6Q8NGB9 312 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 OR1J4Q8NGS1 313 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 GOT1L1Q8NHS2 421 aaPredicted RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 FAM222BQ8WU58 562 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 ABTB1Q969K4 478 aaPredicted RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 NTNG2Q96CW9 530 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 RMND5BQ96G75 393 aaPredicted RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 WDYHV1Q96HA8 205 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 TMEM41AQ96HV5 264 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 TRIB1Q96RU8 372 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 LRRC1Q9BTT6 524 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 TMUB1Q9BVT8 246 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 UGT2B28Q9BY64 529 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 ELOVL6Q9H5J4 265 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 METTL7AQ9H8H3 244 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 FARSBQ9NSD9 589 aaKnown RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 BCAP29Q9UHQ4 241 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 CES1P1Q9UKY3 287 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 CBLCQ9ULV8 474 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 TMCO1Q9UM00 188 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 SLC12A4Q9UP95 1085 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 PCDHA9Q9Y5H5 950 aa12.02□□□□□ -0.49
RPS28-204ENST00000602140 HRNRQ86YZ3 2850 aaPredicted RBP12.02□□□□□ -0.49
RPS28-204ENST00000602140 FREM3P0C091 2139 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 A0A1B0GTL3 188 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 C1orf226A1L170 272 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 C2orf72A6NCS6 295 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 GOLGA6L10A6NI86 522 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 CD8B2A6NJW9 211 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 PPP6CO00743 305 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 CDH16O75309 829 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 GUCY1B2O75343 617 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 ERAL1O75616 437 aaKnown RBP12.01□□□□□ -0.49
RPS28-204ENST00000602140 KRT38O76015 456 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 NAGAP17050 411 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 TACR1P25103 407 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 PTPN6P29350 595 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 MAGEA12P43365 314 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 AGFG1P52594 562 aaKnown RBP12.01□□□□□ -0.49
RPS28-204ENST00000602140 NAGLUP54802 743 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 MGAT2Q10469 447 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 MAP4K2Q12851 820 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 GGTA1PQ4G0N0 100 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 ANGPTL8Q6UXH0 198 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 NUP54Q7Z3B4 507 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 YRDCQ86U90 279 aaKnown RBP12.01□□□□□ -0.49
RPS28-204ENST00000602140 CDC20BQ86Y33 519 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 TGIF2LYQ8IUE0 185 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 SIMC1Q8NDZ2 872 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 CHDHQ8NE62 594 aaPredicted RBP12.01□□□□□ -0.49
RPS28-204ENST00000602140 FAM83FQ8NEG4 500 aaPredicted RBP12.01□□□□□ -0.49
RPS28-204ENST00000602140 ADCY4Q8NFM4 1077 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 TRPC4APQ8TEL6 797 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 SLC44A1Q8WWI5 657 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 ISL2Q96A47 359 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 NODALQ96S42 347 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 ITPAQ9BY32 194 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 MAT2BQ9NZL9 334 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 FOXD3Q9UJU5 478 aaPredicted RBP12.01□□□□□ -0.49
RPS28-204ENST00000602140 CFL2Q9Y281 166 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 PLEKHA6Q9Y2H5 1048 aa12.01□□□□□ -0.49
RPS28-204ENST00000602140 ANKHD1Q8IWZ3 2542 aaKnown RBP12.01□□□□□ -0.49
RPS28-204ENST00000602140 MBD3L4A6NDZ8 208 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms