RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PRR22Q8IZ63 422 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 C1orf52Q8N6N3 182 aaKnown RBP8.98□□□□□ -0.97
VRK3-216ENST00000599342 MTBPQ96DY7 904 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 TMEM41AQ96HV5 264 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 GNRHR2Q96P88 292 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 HBEGFQ99075 208 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 C1QTNF3Q9BXJ4 246 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 ANGPTL4Q9BY76 406 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 METTL7AQ9H8H3 244 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 VPS29Q9UBQ0 182 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 C15orf41Q9Y2V0 281 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 ZNF780BQ9Y6R6 833 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 ADGRG4Q8IZF6 3080 aa8.98□□□□□ -0.97
VRK3-216ENST00000599342 ZNF407Q9C0G0 2248 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 EML6Q6ZMW3 1958 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 ABCA12Q86UK0 2595 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 A0A1B0GTL3 188 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 PPP6CO00743 305 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 GNB5O14775 395 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 PPM1BO75688 479 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 IL2RAP01589 272 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 HPNP05981 417 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 HSD3B1P14060 373 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 BMP5P22003 454 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 HSD3B2P26439 372 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 ECHS1P30084 290 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 HMOX2P30519 316 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 UQCRC1P31930 480 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 CASP3P42574 277 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 CDK9P50750 372 aaKnown RBP8.97□□□□□ -0.97
VRK3-216ENST00000599342 TRA2BP62995 288 aaKnown RBP8.97□□□□□ -0.97
VRK3-216ENST00000599342 CRYZQ08257 329 aaKnown RBP8.97□□□□□ -0.97
VRK3-216ENST00000599342 MAP4K2Q12851 820 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 CSTF3Q12996 717 aaKnown RBP8.97□□□□□ -0.97
VRK3-216ENST00000599342 EXOSC7Q15024 291 aaKnown RBP8.97□□□□□ -0.97
VRK3-216ENST00000599342 ACSF3Q4G176 576 aaPredicted RBP8.97□□□□□ -0.97
VRK3-216ENST00000599342 FAM111BQ6SJ93 734 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 ARSKQ6UWY0 536 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 LCA5Q86VQ0 697 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 LACC1Q8IV20 430 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 LIX1LQ8IVB5 337 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 MMP21Q8N119 569 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 CDYL2Q8N8U2 506 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 ADCY4Q8NFM4 1077 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 OR52R1Q8NGF1 315 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 OR1J4Q8NGS1 313 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 TM4SF18Q96CE8 201 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 OMA1Q96E52 524 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 HSPBAP1Q96EW2 488 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 LCORQ96JN0 433 aaPredicted RBP8.97□□□□□ -0.97
VRK3-216ENST00000599342 TIMP4Q99727 224 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 OSBPL11Q9BXB4 747 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 ITPAQ9BY32 194 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 NXF5Q9H1B4 397 aaKnown RBP8.97□□□□□ -0.97
VRK3-216ENST00000599342 UBQLN3Q9H347 655 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 MAT2BQ9NZL9 334 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 KLRF1Q9NZS2 232 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 PRODH2Q9UF12 536 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 UTS2RQ9UKP6 389 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 CES1P1Q9UKY3 287 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 NFU1Q9UMS0 254 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 CAMK2AQ9UQM7 478 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 DTX4Q9Y2E6 619 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 STK38LQ9Y2H1 464 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 PLLPQ9Y342 182 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 L3MBTL1Q9Y468 752 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 CENPEQ02224 2701 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 HCFC1P51610 2035 aa8.97□□□□□ -0.97
VRK3-216ENST00000599342 GNG14A0A1W2PPG7 69 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 CCDC151A5D8V7 595 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 MANBAO00462 879 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 ACOX3O15254 700 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 PCDH7O60245 1069 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 EPPINO95925 133 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 ABCB1P08183 1280 aaPredicted RBP8.96□□□□□ -0.98
VRK3-216ENST00000599342 ABHD2P08910 425 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 SBK3P0C264 359 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 NAGAP17050 411 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 S1PR1P21453 382 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 TIMP3P35625 211 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 HSD17B3P37058 310 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 KIR2DL3P43628 341 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 ASCL1P50553 236 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 DCAF7P61962 342 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 RCAN2Q14206 197 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 SPIN4Q56A73 249 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 WIPI1Q5MNZ9 446 aaPredicted RBP8.96□□□□□ -0.98
VRK3-216ENST00000599342 TCHHL1Q5QJ38 904 aaPredicted RBP8.96□□□□□ -0.98
VRK3-216ENST00000599342 ZNF678Q5SXM1 525 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 FNDC7Q5VTL7 733 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 TIGD3Q6B0B8 471 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 SLC30A6Q6NXT4 461 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 FAM180BQ6P0A1 224 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 ANGPTL8Q6UXH0 198 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 SPNS3Q6ZMD2 512 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 TIFABQ6ZNK6 161 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 GPRIN3Q6ZVF9 776 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 NUP54Q7Z3B4 507 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 SLC22A9Q8IVM8 553 aa8.96□□□□□ -0.98
VRK3-216ENST00000599342 ZZZ3Q8IYH5 903 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms