RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 OR7D2Q96RA2 312 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 NPLQ9BXD5 320 aaPredicted RBP16■□□□□ 0.15
SHKBP1-216ENST00000598201 C3orf14Q9HBI5 128 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 LYRM4Q9HD34 91 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 SEC14L3Q9UDX4 400 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 NDRG4Q9ULP0 352 aaKnown RBP16■□□□□ 0.15
SHKBP1-216ENST00000598201 DOLKQ9UPQ8 538 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 FAM32AQ9Y421 112 aaKnown RBP16■□□□□ 0.15
SHKBP1-216ENST00000598201 NINQ8N4C6 2090 aa16■□□□□ 0.15
SHKBP1-216ENST00000598201 CCDC160A6NGH7 325 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 SLC9B1P1A6NJY1 282 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 GALR3O60755 368 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 SDC3O75056 442 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 ZNF10P21506 573 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 CDH3P22223 829 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 HMGA2P52926 109 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 IL5RAQ01344 420 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 NPRL3Q12980 569 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 KEAP1Q14145 624 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 DEFB133Q30KQ1 61 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 RBM48Q5RL73 367 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 MANEAQ5SRI9 462 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 BORAQ6PGQ7 559 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 CCDC71Q8IV32 467 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 ZNF655Q8N720 491 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 C19orf47Q8N9M1 422 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 OR9Q2Q8NGE9 314 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 VANGL1Q8TAA9 524 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 NMD3Q96D46 503 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 NIPSNAP1Q9BPW8 284 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 CCDC3Q9BQI4 270 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 BCL2L10Q9HD36 194 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 MS4A12Q9NXJ0 267 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 SCN2AQ99250 2005 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 FAM227AF5H4B4 570 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 CYR61O00622 381 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 LDB3O75112 727 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 GADD45GO95257 159 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 CDH2P19022 906 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 EEF1B2P24534 225 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 PPP2R1BP30154 601 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 TLX1P31314 330 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 MAGEA8P43361 318 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 CSNK1EP49674 416 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 CRISP3P54108 245 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 NXPH1P58417 271 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 CDK5R2Q13319 367 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 LAIR1Q6GTX8 287 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 TCTN3Q6NUS6 607 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 Q6ZPB1 254 aaPredicted RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 ARHGEF39Q8N4T4 335 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 DOK4Q8TEW6 326 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 NCSTNQ92542 709 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 ZNF354BQ96LW1 612 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 QRSL1Q9H0R6 528 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 DDX18Q9NVP1 670 aaKnown RBP15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 KCND3Q9UK17 655 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 GMPPBQ9Y5P6 360 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 SPAG17Q6Q759 2223 aa15.99■□□□□ 0.15
SHKBP1-216ENST00000598201 LAMA1P25391 3075 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 SGK494L7N484 410 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 SERPINB7O75635 380 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 EPPINO95925 133 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 RPP38P78345 283 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 SHC2P98077 582 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 TCF15Q12870 199 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 ZNF773Q6PK81 442 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 KCTD8Q6ZWB6 473 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 USP53Q70EK8 1073 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 C11orf74Q86VG3 221 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 CA13Q8N1Q1 262 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 PRSS33Q8NF86 280 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 BBS10Q8TAM1 723 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 UBE2FQ969M7 185 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 MAP3K3Q99759 626 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 SH3GL3Q99963 347 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 GABARAPL3Q9BY60 117 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 UCKL1Q9NWZ5 548 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 SDK1Q7Z5N4 2213 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 SLC1A7O00341 560 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 AQP9O43315 295 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 FGF17O60258 216 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 HTR1AP08908 422 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 CPMP14384 443 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 PEX19P40855 299 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 CAPZBP47756 277 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 ANXA11P50995 505 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 PIGFQ07326 219 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 PMS2P3Q13401 168 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 GPAT3Q53EU6 434 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 FAM92BQ6ZTR7 304 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 MCATQ8IVS2 390 aaKnown RBP15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 PITX2Q99697 317 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 POLR1BQ9H9Y6 1135 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 PAK1IP1Q9NWT1 392 aaPredicted RBP15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 NTMQ9P121 344 aa15.98■□□□□ 0.15
SHKBP1-216ENST00000598201 TRBV4-1A0A0J9YWV2 114 aa15.97■□□□□ 0.15
SHKBP1-216ENST00000598201 M0R3H8 397 aa15.97■□□□□ 0.15
SHKBP1-216ENST00000598201 MED26O95402 600 aa15.97■□□□□ 0.15
SHKBP1-216ENST00000598201 PROS1P07225 676 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms