RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MFRPQ9BY79 579 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 PAIP1Q9H074 479 aaKnown RBP8.82□□□□□ -1
TRIM28-208ENST00000597172 SLC26A1Q9H2B4 701 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 WDR41Q9HAD4 459 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 EFCAB1Q9HAE3 211 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 NECTIN3Q9NQS3 549 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 PRTFDC1Q9NRG1 225 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 SLC6A13Q9NSD5 602 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 ATAD3AQ9NVI7 634 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 FAM120CQ9NX05 1096 aaKnown RBP8.82□□□□□ -1
TRIM28-208ENST00000597172 IFT80Q9P2H3 777 aaPredicted RBP8.82□□□□□ -1
TRIM28-208ENST00000597172 ZNF282Q9UDV7 671 aaPredicted RBP8.82□□□□□ -1
TRIM28-208ENST00000597172 BTNL2Q9UIR0 455 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 LEF1Q9UJU2 399 aaPredicted RBP8.82□□□□□ -1
TRIM28-208ENST00000597172 PSME2Q9UL46 239 aa8.82□□□□□ -1
TRIM28-208ENST00000597172 PRRC2AP48634 2157 aaKnown RBP8.82□□□□□ -1
TRIM28-208ENST00000597172 ZGRF1Q86YA3 2104 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 NSD1Q96L73 2696 aaPredicted RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 IGKV3D-11A0A0A0MRZ8 115 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 BBIP1A8MTZ0 92 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 CLDN4O14493 209 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 MRASO14807 208 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 ANGPT2O15123 496 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PDPK1O15530 556 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 KLF7O75840 302 aaPredicted RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 UNC5CO95185 931 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 CPSF4O95639 269 aaKnown RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 C6orf47O95873 294 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 C1QCP02747 245 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 GSNP06396 782 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 CPMP14384 443 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PORP16435 677 aaPredicted RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 CSNK2A2P19784 350 aaPredicted RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 MAOAP21397 527 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 ITGA3P26006 1051 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PTGER1P34995 402 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PTGER4P35408 488 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 TRPC1P48995 793 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 MANFP55145 182 aaKnown RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 HBA1P69905 142 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 SLC25A3Q00325 362 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 OCA2Q04671 838 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 MGAT2Q10469 447 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 SLC13A2Q13183 592 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 MLC1Q15049 377 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 MMEL1Q495T6 779 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 GTDC1Q4AE62 458 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 LRIF1Q5T3J3 769 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 FAM69BQ5VUD6 431 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 CPZQ66K79 652 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 C8orf82Q6P1X6 216 aaPredicted RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 QSOX2Q6ZRP7 698 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 SHISA6Q6ZSJ9 500 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 CCDC121Q6ZUS5 278 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PRSS58Q8IYP2 241 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 NATD1Q8N6N6 113 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 SPATA3Q8NHX4 192 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PSMA8Q8TAA3 256 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 OR5P2Q8WZ92 322 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 TSLPQ969D9 159 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 FKBP10Q96AY3 582 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PPWD1Q96BP3 646 aaKnown RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 ITCHQ96J02 903 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PTCHD1Q96NR3 888 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 BBS4Q96RK4 519 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 SPSB2Q99619 263 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 ALOXE3Q9BYJ1 711 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 VN1R1Q9GZP7 353 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 SIRT3Q9NTG7 399 aaPredicted RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 ACSS1Q9NUB1 689 aaPredicted RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 TAS2R1Q9NYW7 299 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 SLC25A37Q9NYZ2 338 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 PADI1Q9ULC6 663 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 MRPS33Q9Y291 106 aaKnown RBP8.81□□□□□ -1
TRIM28-208ENST00000597172 PCDHB14Q9Y5E9 798 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 ZNF780BQ9Y6R6 833 aa8.81□□□□□ -1
TRIM28-208ENST00000597172 ZNF469Q96JG9 3925 aaPredicted RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 A0A096LPI6 279 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 TRBV5-3A0A0A0MS03 114 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 FXYD1O00168 92 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 ATP5HO75947 161 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 CCNYL3P0C7X3 344 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 SLC35E2P0CK97 266 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 CD99P14209 185 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 DDX5P17844 614 aaKnown RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 PPP2R1BP30154 601 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 MPIP34949 423 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 CDK9P50750 372 aaKnown RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 NCBP2P52298 156 aaKnown RBP eCLIP8.8□□□□□ -1
TRIM28-208ENST00000597172 NCALDP61601 193 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 MAP7Q14244 749 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 CRTC2Q53ET0 693 aaPredicted RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 HACD2Q6Y1H2 254 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 YTHDF3Q7Z739 585 aaKnown RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 CLEC4FQ8N1N0 589 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 PCYOX1LQ8NBM8 494 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 RBM15BQ8NDT2 890 aaKnown RBP8.8□□□□□ -1
TRIM28-208ENST00000597172 VPS37AQ8NEZ2 397 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 ADCY4Q8NFM4 1077 aa8.8□□□□□ -1
TRIM28-208ENST00000597172 OR4A15Q8NGL6 344 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms