RNA–Protein interactions for RNA: ENST00000584944.5

TRAF4-215, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 825 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-215ENST00000584944 ZIM2Q9NZV7 527 aa12.89□□□□□ -0.35
TRAF4-215ENST00000584944 KLHL14Q9P2G3 628 aa12.89□□□□□ -0.35
TRAF4-215ENST00000584944 ERVK-11Q9UQG0 969 aa12.89□□□□□ -0.35
TRAF4-215ENST00000584944 CLDN16Q9Y5I7 305 aa12.89□□□□□ -0.35
TRAF4-215ENST00000584944 GPR45Q9Y5Y3 372 aa12.89□□□□□ -0.35
TRAF4-215ENST00000584944 RELNP78509 3460 aa12.89□□□□□ -0.35
TRAF4-215ENST00000584944 A0A1W2PS29 197 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 CEACAM4O75871 244 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 IL6P05231 212 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 EFNA1P20827 205 aaPredicted RBP12.88□□□□□ -0.35
TRAF4-215ENST00000584944 KRT20P35900 424 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 MC3RP41968 323 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 SSR4P51571 173 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 POLR2JP52435 117 aaKnown RBP12.88□□□□□ -0.35
TRAF4-215ENST00000584944 C21orf58P58505 322 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 UFM1P61960 85 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF155Q12901 538 aaPredicted RBP12.88□□□□□ -0.35
TRAF4-215ENST00000584944 MFAP5Q13361 173 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 SQLEQ14534 574 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 EXOSC7Q15024 291 aaKnown RBP12.88□□□□□ -0.35
TRAF4-215ENST00000584944 PRICKLE4Q2TBC4 344 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 METTL21CQ5VZV1 264 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 B3GNTL1Q67FW5 361 aaPredicted RBP12.88□□□□□ -0.35
TRAF4-215ENST00000584944 OR4F3Q6IEY1 312 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 FAM111BQ6SJ93 734 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 DGAT2L6Q6ZPD8 337 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF551Q7Z340 670 aaPredicted RBP12.88□□□□□ -0.35
TRAF4-215ENST00000584944 LGI4Q8N135 537 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 TRIML2Q8N7C3 387 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 APCDD1LQ8NCL9 501 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 OR52R1Q8NGF1 315 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 OR4A15Q8NGL6 344 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF675Q8TD23 568 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF721Q8TF20 911 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 STON2Q8WXE9 905 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 ASB15Q8WXK1 588 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 OR5P2Q8WZ92 322 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 LMF1Q96S06 567 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 SDR39U1Q9NRG7 319 aaPredicted RBP12.88□□□□□ -0.35
TRAF4-215ENST00000584944 PPIEQ9UNP9 301 aaKnown RBP12.88□□□□□ -0.35
TRAF4-215ENST00000584944 TP53TG5Q9Y2B4 290 aa12.88□□□□□ -0.35
TRAF4-215ENST00000584944 PRSS51A0A1B0GVH4 220 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 CAPN14A8MX76 684 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 WWP2O00308 870 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 ANP32DO95626 131 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 CPSF4O95639 269 aaKnown RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 GPR143P51810 404 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 SEC24CP53992 1094 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 PRKAG1P54619 331 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 FUT7Q11130 342 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 TP53BP2Q13625 1128 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 VPS26BQ4G0F5 336 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 TRMT12Q53H54 448 aaKnown RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF628Q5EBL2 1059 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 COLEC12Q5KU26 742 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 SPANXN4Q5MJ08 99 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 ANGPTL8Q6UXH0 198 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 SPATA21Q7Z572 469 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 RIMKLAQ8IXN7 391 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF321PQ8N8H1 164 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 TEX19Q8NA77 164 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 OR8J2Q8NGG1 315 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 JADE3Q92613 823 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 TMEM125Q96AQ2 219 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 COQ8BQ96D53 544 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF317Q96PQ6 595 aaPredicted RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 SMAD5Q99717 465 aaKnown RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 ELAC2Q9BQ52 826 aaKnown RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF552Q9H707 407 aaPredicted RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 EQTNQ9NQ60 294 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 FAM120CQ9NX05 1096 aaKnown RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 MYOTQ9UBF9 498 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 EXO1Q9UQ84 846 aaKnown RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 YARS2Q9Y2Z4 477 aaKnown RBP12.87□□□□□ -0.35
TRAF4-215ENST00000584944 OR10H1Q9Y4A9 318 aa12.87□□□□□ -0.35
TRAF4-215ENST00000584944 A0A087WV62 115 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 FAM234BA2RU67 622 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 HRKO00198 91 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 NR5A2O00482 541 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 RNASET2O00584 256 aaKnown RBP12.86□□□□□ -0.35
TRAF4-215ENST00000584944 PLOD3O60568 738 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 ITGA10O75578 1167 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 OR2J2O76002 312 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 C6orf47O95873 294 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 IGKV3-11P04433 115 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 PGRP06401 933 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 CT62P0C5K7 136 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 CHI3L1P36222 383 aaPredicted RBP12.86□□□□□ -0.35
TRAF4-215ENST00000584944 CYB561P49447 251 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 TMED10P49755 219 aaKnown RBP12.86□□□□□ -0.35
TRAF4-215ENST00000584944 SLC37A1P57057 533 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 DCAF7P61962 342 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 SRSF1Q07955 248 aaKnown RBP eCLIP12.86□□□□□ -0.351e-7■■■■□ 23.8
TRAF4-215ENST00000584944 CEBPEQ15744 281 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 TIGD2Q4W5G0 525 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 AGKQ53H12 422 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 ZNF385BQ569K4 471 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 C6orf10Q5SRN2 563 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 OPN5Q6U736 354 aa12.86□□□□□ -0.35
TRAF4-215ENST00000584944 CAMKMTQ7Z624 323 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms