RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 PCCBP05166 539 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 LYNP07948 512 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ABHD2P08910 425 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 VCLP18206 1134 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 HRH2P25021 359 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CTNNA2P26232 953 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CASP3P42574 277 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 PTH2RP49190 550 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 NUMBP49757 651 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 SULT1E1P49888 294 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 MMP15P51511 669 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ATXN3P54252 364 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CDH6P55285 790 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 YWHAGP61981 247 aaKnown RBP eCLIP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 SNRPD1P62314 119 aaKnown RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 DEFB103AP81534 67 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 SP4Q02446 784 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 BIKQ13323 160 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 RUNX3Q13761 415 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 MTF1Q14872 753 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 TYSND1Q2T9J0 566 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 KIF19Q2TAC6 998 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CFAP157Q5JU67 520 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ZNF776Q68DI1 518 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 TEX38Q6PEX7 206 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 BRAT1Q6PJG6 821 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 WDR88Q6ZMY6 472 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 LIN28BQ6ZN17 250 aaKnown RBP eCLIP1.79□□□□□ -2.122e-7■■■■□ 23.8
SMCHD1-211ENST00000584897 UTS2BQ765I0 119 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 TRIM69Q86WT6 500 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CHSY1Q86X52 802 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CDKL3Q8IVW4 592 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 PM20D2Q8IYS1 436 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 TBC1D21Q8IYX1 336 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 RCOR2Q8IZ40 523 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 RAB42Q8N4Z0 105 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 GBGT1Q8N5D6 347 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 PAPD5Q8NDF8 572 aaKnown RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 IPMKQ8NFU5 416 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 OR8D1Q8WZ84 308 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 EME1Q96AY2 570 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 OXNAD1Q96HP4 312 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 AGAP3Q96P47 875 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 TSGA13Q96PP4 275 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 MYADMQ96S97 322 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 PKP2Q99959 881 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 QTRT1Q9BXR0 403 aaKnown RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 OSBPL8Q9BZF1 889 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ISCUQ9H1K1 167 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 RIMS4Q9H426 269 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 DYRK4Q9NR20 520 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CISHQ9NSE2 258 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 C6orf203Q9P0P8 240 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 DEC1Q9P2X7 70 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ERVK-18Q9QC07 812 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 UBQLN2Q9UHD9 624 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 MMP17Q9ULZ9 603 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 HEBP2Q9Y5Z4 205 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 SPTBN4Q9H254 2564 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 DNAH3Q8TD57 4116 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 IGLV3-10A0A075B6K4 115 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CCDC162PA2VCL2 907 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 GOLGA8JA6NMD2 632 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 RRHO14718 337 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 EIF3HO15372 352 aaKnown RBP eCLIP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 TOX3O15405 576 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ACSL4O60488 711 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ANXA9O76027 345 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 SOX30O94993 753 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 VNN2O95498 520 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 IGSF6O95976 241 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 MOCS2O96007 188 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 RPN2P04844 631 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 RAB40ALP0C0E4 278 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 OR2T7P0C7T2 308 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CXCL8P10145 99 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CHRNB1P11230 501 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CYP11B1P15538 503 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 LBPP18428 481 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ATP6V1C1P21283 382 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ALDH4A1P30038 563 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 OR1D2P34982 312 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 IDUAP35475 653 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 FDFT1P37268 417 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 MAGEA4P43358 317 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CXCL12P48061 93 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 SOX2P48431 317 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 MLLT10P55197 1068 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CDH11P55287 796 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 DAOAP59103 153 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 SKP1P63208 163 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 IL10RBQ08334 325 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 ZNF177Q13360 481 aaPredicted RBP1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 DUOXA1Q1HG43 343 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 C2orf68Q2NKX9 166 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 SLC39A12Q504Y0 691 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CMPK2Q5EBM0 449 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 CEP78Q5JTW2 689 aa1.79□□□□□ -2.12
SMCHD1-211ENST00000584897 DCAF12L2Q5VW00 463 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms