RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 FETUBQ9UGM5 382 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 ADAM29Q9UKF5 820 aa19.25■□□□□ 0.67
VPS53-216ENST00000574029 A0A096LPK6 155 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 TUBAL3A6NHL2 446 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 CDH16O75309 829 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 ABCB1P08183 1280 aaPredicted RBP19.24■□□□□ 0.67
VPS53-216ENST00000574029 EPXP11678 715 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 CPMP14384 443 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 NAGAP17050 411 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 S1PR1P21453 382 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 GPX3P22352 226 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 CTSSP25774 331 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 ABCD3P28288 659 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 XKP51811 444 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 EIPR1Q53HC9 387 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 DCST1Q5T197 706 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 TIGD3Q6B0B8 471 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 TMEM81Q6P7N7 255 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 KIF18BQ86Y91 864 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 OR52B6Q8NGF0 335 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 CDK15Q96Q40 435 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 RAB17Q9H0T7 212 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 NOL11Q9H8H0 719 aaKnown RBP19.24■□□□□ 0.67
VPS53-216ENST00000574029 CALHM2Q9HA72 323 aa19.24■□□□□ 0.67
VPS53-216ENST00000574029 ANKHD1Q8IWZ3 2542 aaKnown RBP19.24■□□□□ 0.67
VPS53-216ENST00000574029 HRNRQ86YZ3 2850 aaPredicted RBP19.24■□□□□ 0.67
VPS53-216ENST00000574029 GNB5O14775 395 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 PPM1BO75688 479 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 IL18BPO95998 194 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 FOSL1P15407 271 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 NT5EP21589 574 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 OPRM1P35372 400 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 DGKQP52824 942 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 NAGLUP54802 743 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 ADAM8P78325 824 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 SORDQ00796 357 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 TOMM20Q15388 145 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 TECRLQ5HYJ1 363 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 WIPI1Q5MNZ9 446 aaPredicted RBP19.23■□□□□ 0.67
VPS53-216ENST00000574029 FRG2Q64ET8 278 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 KLC3Q6P597 504 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 ABTB1Q969K4 478 aaPredicted RBP19.23■□□□□ 0.67
VPS53-216ENST00000574029 FRG2BQ96QU4 278 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 NTMT1Q9BV86 223 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 NXF5Q9H1B4 397 aaKnown RBP19.23■□□□□ 0.67
VPS53-216ENST00000574029 DTX4Q9Y2E6 619 aa19.23■□□□□ 0.67
VPS53-216ENST00000574029 AKAP6Q13023 2319 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 ACTL6AO96019 429 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 RAF1P04049 648 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 ALDOAP04075 364 aaKnown RBP19.22■□□□□ 0.67
VPS53-216ENST00000574029 KLK1P06870 262 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 PORP16435 677 aaPredicted RBP19.22■□□□□ 0.67
VPS53-216ENST00000574029 KRT15P19012 456 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 PRICKLE4Q2TBC4 344 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 C10orf62Q5T681 223 aaPredicted RBP19.22■□□□□ 0.67
VPS53-216ENST00000574029 C6orf163Q5TEZ5 329 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 NUP54Q7Z3B4 507 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 FAM83FQ8NEG4 500 aaPredicted RBP19.22■□□□□ 0.67
VPS53-216ENST00000574029 OR1J4Q8NGS1 313 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 ZPLD1Q8TCW7 415 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 HGDQ93099 445 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 ATP6V1E2Q96A05 226 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 MRRFQ96E11 262 aaKnown RBP19.22■□□□□ 0.67
VPS53-216ENST00000574029 MRPL1Q9BYD6 325 aaKnown RBP19.22■□□□□ 0.67
VPS53-216ENST00000574029 AHSPQ9NZD4 102 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 CES1P1Q9UKY3 287 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 RPH3AQ9Y2J0 694 aaPredicted RBP19.22■□□□□ 0.67
VPS53-216ENST00000574029 DOCK7Q96N67 2140 aa19.22■□□□□ 0.67
VPS53-216ENST00000574029 GOSR1O95249 250 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 ATE1O95260 518 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 TYK2P29597 1187 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 PTGDSP41222 190 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 SERPINB8P50452 374 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 CCNG1P51959 295 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 AGFG1P52594 562 aaKnown RBP19.21■□□□□ 0.67
VPS53-216ENST00000574029 MGAT2Q10469 447 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 MAP4K2Q12851 820 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 CCNYL2Q5T2Q4 361 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 SLC30A6Q6NXT4 461 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 SLC48A1Q6P1K1 146 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 ANGPTL8Q6UXH0 198 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 PAGE2Q7Z2X7 111 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 YRDCQ86U90 279 aaKnown RBP19.21■□□□□ 0.67
VPS53-216ENST00000574029 PLD6Q8N2A8 252 aaKnown RBP19.21■□□□□ 0.67
VPS53-216ENST00000574029 VWA5B2Q8N398 1253 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 METTL4Q8N3J2 472 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 MMGT1Q8N4V1 131 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 PTGR2Q8N8N7 351 aaPredicted RBP19.21■□□□□ 0.67
VPS53-216ENST00000574029 C9orf106Q8NAJ2 232 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 MNS1Q8NEH6 495 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 LINC01560Q8TB33 94 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 TRPC4APQ8TEL6 797 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 GSX1Q9H4S2 264 aaPredicted RBP19.21■□□□□ 0.67
VPS53-216ENST00000574029 METTL7AQ9H8H3 244 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 ZBTB26Q9HCK0 441 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 ZNF639Q9UID6 485 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 CFL2Q9Y281 166 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 PCDHA9Q9Y5H5 950 aa19.21■□□□□ 0.67
VPS53-216ENST00000574029 SNPHO15079 494 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 ATP1B1P05026 303 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms