RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 DNAJC15Q9Y5T4 150 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 LRBAP50851 2863 aa12.37□□□□□ -0.43
CLK3-216ENST00000564468 NUP214P35658 2090 aaPredicted RBP12.36□□□□□ -0.43
CLK3-216ENST00000564468 NADKO95544 446 aaPredicted RBP12.36□□□□□ -0.43
CLK3-216ENST00000564468 CLPSP04118 112 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 FBXO45P0C2W1 286 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 LINC00032P0C843 101 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 S1PR1P21453 382 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 MAPK1P28482 360 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 NTSP30990 170 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 GPR85P60893 370 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 KIAA0040Q15053 153 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 CEBPEQ15744 281 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 NTRK2Q16620 822 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 FAM71E1Q6IPT2 247 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 MTFR2Q6P444 385 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 FAM111BQ6SJ93 734 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 Q6ZSR9 355 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 ZCCHC23Q6ZST2 131 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 SLC22A16Q86VW1 577 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 SIAH3Q8IW03 269 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 FAM9CQ8IZT9 166 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 ZNF441Q8N8Z8 693 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 ADCY4Q8NFM4 1077 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 OR2M7Q8NG81 312 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.36□□□□□ -0.43
CLK3-216ENST00000564468 PAQR8Q8TEZ7 354 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 HSPBAP1Q96EW2 488 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 PPP3R2Q96LZ3 170 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 ERRFI1Q9UJM3 462 aaPredicted RBP12.36□□□□□ -0.43
CLK3-216ENST00000564468 NPFFR2Q9Y5X5 522 aa12.36□□□□□ -0.43
CLK3-216ENST00000564468 CACNA1DQ01668 2161 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 TMEM114B3SHH9 223 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 ACOX3O15254 700 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 LRRTM2O43300 516 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 ZNF354AO60765 605 aaPredicted RBP12.35□□□□□ -0.43
CLK3-216ENST00000564468 HSPA4LO95757 839 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 SERPINE1P05121 402 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 NAGAP17050 411 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 GRK2P25098 689 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 ASMTP46597 345 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 PSPHP78330 225 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 MGAT2Q10469 447 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 UGT3A2Q3SY77 523 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 TBCELQ5QJ74 424 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 BEND6Q5SZJ8 279 aaPredicted RBP12.35□□□□□ -0.43
CLK3-216ENST00000564468 TICAM1Q8IUC6 712 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 EID3Q8N140 333 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 FAM13CQ8NE31 585 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 OR52R1Q8NGF1 315 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 OR6Y1Q8NGX8 325 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 RELTQ969Z4 430 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 ADIPOR1Q96A54 375 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 LCORQ96JN0 433 aaPredicted RBP12.35□□□□□ -0.43
CLK3-216ENST00000564468 SECISBP2Q96T21 854 aaKnown RBP12.35□□□□□ -0.43
CLK3-216ENST00000564468 TSPAN10Q9H1Z9 355 aaPredicted RBP12.35□□□□□ -0.43
CLK3-216ENST00000564468 TUBB1Q9H4B7 451 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 IL1RL2Q9HB29 575 aa12.35□□□□□ -0.43
CLK3-216ENST00000564468 SUCOQ9UBS9 1254 aaKnown RBP12.35□□□□□ -0.43
CLK3-216ENST00000564468 BOKQ9UMX3 212 aaPredicted RBP12.35□□□□□ -0.43
CLK3-216ENST00000564468 ABCA12Q86UK0 2595 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 ANKRD17O75179 2603 aaKnown RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 TRGV8A0A0C4DH27 118 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 A1L4Q6 167 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 WDR91A4D1P6 747 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 WIPF3A6NGB9 483 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 MYO1GB0I1T2 1018 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 PIP5K1BO14986 540 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 LSM1O15116 133 aaKnown RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 HS6ST1O60243 411 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 PLOD3O60568 738 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 SLC19A2O60779 497 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 CBX7O95931 251 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 LDLRP01130 860 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 DHRS4L1P0CG22 281 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 CCL3P10147 92 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 ABOP16442 354 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 DRD5P21918 477 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 GPX3P22352 226 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 RPL3P39023 403 aaKnown RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 PPICP45877 212 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 NCBP2P52298 156 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLK3-216ENST00000564468 PPIAP62937 165 aaKnown RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 RPL38P63173 70 aaKnown RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 DUSP2Q05923 314 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 EXOSC7Q15024 291 aaKnown RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 RPS6KA2Q15349 733 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 LTB4RQ15722 352 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 CHI3L2Q15782 390 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 GALNTL6Q49A17 601 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 ATP6AP1LQ52LC2 224 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 TRMT12Q53H54 448 aaKnown RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 ZNF628Q5EBL2 1059 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 RNFT1Q5M7Z0 435 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 FAM180BQ6P0A1 224 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 LYPD8Q6UX82 237 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 MAMDC2Q7Z304 686 aaPredicted RBP12.34□□□□□ -0.43
CLK3-216ENST00000564468 SPPL2CQ8IUH8 684 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 FBXW8Q8N3Y1 598 aa12.34□□□□□ -0.43
CLK3-216ENST00000564468 OR2T11Q8NH01 316 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms