RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 TP73O15350 636 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 CD5LO43866 347 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 AIFM1O95831 613 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 TGFB1P01137 390 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 CTAGE8P0CG41 777 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 COX7A2P14406 83 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 IVDP26440 423 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 BSGP35613 385 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 SSR2P43308 183 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 TPD52P55327 224 aaPredicted RBP9.36□□□□□ -0.91
SF3B3-204ENST00000563739 SRSF2Q01130 221 aaKnown RBP9.36□□□□□ -0.91
SF3B3-204ENST00000563739 SRYQ05066 204 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 DUSP2Q05923 314 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 MGAT2Q10469 447 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 SLAMF1Q13291 335 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 RCAN2Q14206 197 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 TBCCQ15814 346 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 NNATQ16517 81 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 DEPDC1Q5TB30 811 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 KHDRBS2Q5VWX1 349 aaKnown RBP9.36□□□□□ -0.91
SF3B3-204ENST00000563739 SLC29A4Q7RTT9 530 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 ADAMTSL2Q86TH1 951 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 GPSM1Q86YR5 675 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 TRIM42Q8IWZ5 723 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 CTAGE4Q8IX94 777 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 SPATA6LQ8N4H0 392 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 PDPRQ8NCN5 879 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 FIG4Q92562 907 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 TP53INP1Q96A56 240 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 ART5Q96L15 291 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 C16orf45Q96MC5 204 aaPredicted RBP9.36□□□□□ -0.91
SF3B3-204ENST00000563739 TM9SF2Q99805 663 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 EFCAB11Q9BUY7 163 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 SMYD2Q9NRG4 433 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 PTBP2Q9UKA9 531 aaKnown RBP9.36□□□□□ -0.91
SF3B3-204ENST00000563739 FBXL2Q9UKC9 423 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 MAPRE3Q9UPY8 281 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 SAR1BQ9Y6B6 198 aa9.36□□□□□ -0.91
SF3B3-204ENST00000563739 GOLGA6L10A0A0M3HER8 536 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 C2orf92A0A1B0GVN3 265 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 FAM95CA0A1B0GW59 222 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 CASKO14936 926 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 PGRMC2O15173 223 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 ICOSLGO75144 302 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 UGT2B11O75310 529 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 H2AFYO75367 372 aaKnown RBP9.35□□□□□ -0.91
SF3B3-204ENST00000563739 PIAS1O75925 651 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 GPR75O95800 540 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 CNTFP26441 200 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 GALNSP34059 522 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 MASP1P48740 699 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 ETF1P62495 437 aaKnown RBP9.35□□□□□ -0.91
SF3B3-204ENST00000563739 PCDH1Q08174 1060 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 CHIT1Q13231 466 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 RCN2Q14257 317 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 PDK4Q16654 411 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 MALRD1Q5VYJ5 2156 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 FAM219BQ5XKK7 198 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 OR4C11Q6IEV9 310 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 SEZ6L2Q6UXD5 910 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 ZNF704Q6ZNC4 412 aaPredicted RBP9.35□□□□□ -0.91
SF3B3-204ENST00000563739 GPR180Q86V85 440 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 PPIL6Q8IXY8 311 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 ZCCHC7Q8N3Z6 543 aaKnown RBP9.35□□□□□ -0.91
SF3B3-204ENST00000563739 OR7G3Q8NG95 312 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 ZC3HAV1LQ96H79 300 aaKnown RBP9.35□□□□□ -0.91
SF3B3-204ENST00000563739 VPS39Q96JC1 886 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 OSBPL11Q9BXB4 747 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 ITPAQ9BY32 194 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 ROGDIQ9GZN7 287 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 SNX15Q9NRS6 342 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 NDRG3Q9UGV2 375 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 RNF112Q9ULX5 631 aa9.35□□□□□ -0.91
SF3B3-204ENST00000563739 FREM1Q5H8C1 2179 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 TGP01266 2768 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 IQANK1A0A1B0GTG1 560 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 FRG2CA6NGY1 282 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 DNALI1O14645 258 aaPredicted RBP9.34□□□□□ -0.91
SF3B3-204ENST00000563739 TP53I11O14683 189 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 ZIC3O60481 467 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 NDUFS7O75251 213 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 PPM1BO75688 479 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 RHOXF2BP0C7M4 288 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 CD1DP15813 335 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 FNTAP49354 379 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 GAS1P54826 345 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 ATP5J2P56134 94 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 ZNF844Q08AG5 666 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 DLG1Q12959 904 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 FASTKD3Q14CZ7 662 aaKnown RBP9.34□□□□□ -0.91
SF3B3-204ENST00000563739 SF3B4Q15427 424 aaKnown RBP eCLIP9.34□□□□□ -0.917e-7■■■■■ 28.3
SF3B3-204ENST00000563739 CLEC12BQ2HXU8 276 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 TMEM35AQ53FP2 167 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 HP1BP3Q5SSJ5 553 aaPredicted RBP9.34□□□□□ -0.91
SF3B3-204ENST00000563739 ANKRD34AQ69YU3 496 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 PODNL1Q6PEZ8 512 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 SYT10Q6XYQ8 523 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 PLEKHM3Q6ZWE6 761 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 PACS2Q86VP3 889 aa9.34□□□□□ -0.91
SF3B3-204ENST00000563739 CREG2Q8IUH2 290 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms