RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 SLC24A5Q71RS6 500 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 SERPINA11Q86U17 422 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 PAQR7Q86WK9 346 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 ADGRG3Q86Y34 549 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 CBWD2Q8IUF1 395 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 ZNF683Q8IZ20 524 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 BEST3Q8N1M1 668 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 KLHL36Q8N4N3 616 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 RNF10Q8N5U6 811 aaKnown RBP4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 FAM86B1Q8N7N1 296 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 CSNK2A3Q8NEV1 391 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 OR13F1Q8NGS4 319 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 HMGCLL1Q8TB92 370 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 PHOSPHO2Q8TCD6 241 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 SUSD6Q92537 303 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 RFKQ969G6 155 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 ZNF503Q96F45 646 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 ALS2CR12Q96Q35 445 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 PRMT1Q99873 361 aaKnown RBP4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 KCNS3Q9BQ31 491 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 PRRG3Q9BZD7 231 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 LRRC4Q9HBW1 653 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 MRPL22Q9NWU5 206 aaKnown RBP4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 PTTG3PQ9NZH4 202 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 NPAP1Q9NZP6 1156 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 ERVK-18Q9QC07 812 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 CD300AQ9UGN4 299 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 ACSL5Q9ULC5 683 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 SH2B3Q9UQQ2 575 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 WDR83OSQ9Y284 106 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 MYH6P13533 1939 aa4.81□□□□□ -1.64
VPS35P1-201ENST00000563400 CD8B2A6NJW9 211 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 OR6C65A6NJZ3 312 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 KCNU1A8MYU2 1149 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 F8VVB4 439 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 F8VWA3 439 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 UGDHO60701 494 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 LPXNO60711 386 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 CDC14BO60729 498 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 NDUFS6O75380 124 aaKnown RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 TIMP1P01033 207 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 APOA1P02647 267 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 MSR1P21757 451 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 CMA1P23946 247 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 APOBEC1P41238 236 aaKnown RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 MMP15P51511 669 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 THOP1P52888 689 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 LIMK2P53671 638 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 C21orf59P57076 290 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 DAOAP59103 153 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 YWHAEP62258 255 aaKnown RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 UBE2IP63279 158 aaKnown RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 MBTD1Q05BQ5 628 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 NFATC2Q13469 925 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 GNA13Q14344 377 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 NPTX1Q15818 432 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 EXT1Q16394 746 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 HSDL1Q3SXM5 330 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 AWAT1Q58HT5 328 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 CEP78Q5JTW2 689 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 GRTP1Q5TC63 336 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 MLIPQ5VWP3 458 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 RAET1LQ5VY80 246 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 UGT3A1Q6NUS8 523 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 TMEM53Q6P2H8 277 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 TRIM65Q6PJ69 517 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 GRASPQ7Z6J2 395 aaPredicted RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 SLC22A16Q86VW1 577 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 VRK2Q86Y07 508 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 SFTPA1Q8IWL2 248 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 EMC1Q8N766 993 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 FAM47BQ8NA70 645 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 NDNFQ8TB73 568 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 GPX8Q8TED1 209 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 PAQR8Q8TEZ7 354 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 GIPC3Q8TF64 312 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 GLYATL2Q8WU03 294 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 MAIP1Q8WWC4 291 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 CRYGNQ8WXF5 182 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 SLCO2A1Q92959 643 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 TMEM45BQ96B21 275 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 SGK3Q96BR1 496 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 COQ8BQ96D53 544 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 COQ2Q96H96 371 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 APOLD1Q96LR9 279 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 TRNT1Q96Q11 434 aaKnown RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 LXNQ9BS40 222 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 LMF2Q9BU23 707 aaKnown RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 MSTO1Q9BUK6 570 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 ALOXE3Q9BYJ1 711 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 NAT10Q9H0A0 1025 aaKnown RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 SEMA6AQ9H2E6 1030 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 IL26Q9NPH9 171 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 DUSP22Q9NRW4 184 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 DDX28Q9NUL7 540 aaKnown RBP4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 MTCH1Q9NZJ7 389 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 STAP1Q9ULZ2 295 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 SLC22A14Q9Y267 594 aa4.8□□□□□ -1.64
VPS35P1-201ENST00000563400 TMED3Q9Y3Q3 217 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms