RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 OR2L13Q8N349 312 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 KIF2BQ8N4N8 673 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 HORMAD2Q8N7B1 307 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 LSM14AQ8ND56 463 aaKnown RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 OR52R1Q8NGF1 315 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 OR4A15Q8NGL6 344 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 SFXN5Q8TD22 340 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 C10orf82Q8WW14 230 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 KAT2AQ92830 837 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 ELP4Q96EB1 424 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 OR52E6Q96RD3 313 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 LMF1Q96S06 567 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 SMAD5Q99717 465 aaKnown RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 ELAC2Q9BQ52 826 aaKnown RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 NUDT9Q9BW91 350 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 WWTR1Q9GZV5 400 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 EPN3Q9H201 632 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 ZNF552Q9H707 407 aaPredicted RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 MYOTQ9UBF9 498 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 ZNF639Q9UID6 485 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 BTNL2Q9UIR0 455 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 C19orf53Q9UNZ5 99 aaPredicted RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 YARS2Q9Y2Z4 477 aaKnown RBP9.36□□□□□ -0.91
USP3-216ENST00000559873 SNX8Q9Y5X2 465 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 PCSK5Q92824 1860 aa9.36□□□□□ -0.91
USP3-216ENST00000559873 FAM208BQ5VWN6 2430 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ZFYVE26Q68DK2 2539 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 CCDC154A6NI56 674 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 CAPN14A8MX76 684 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 MASP2O00187 686 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 HRKO00198 91 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 NR5A2O00482 541 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ANGPT2O15123 496 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ACOX3O15254 700 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 EMC8O43402 210 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 SNX3O60493 162 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 SHOX2O60902 331 aaPredicted RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 ITGA10O75578 1167 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ANP32DO95626 131 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 C6orf47O95873 294 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 CBX7O95931 251 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 DRD4P21917 467 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 GPX3P22352 226 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ADSLP30566 484 aaPredicted RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 PTGER1P34995 402 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 PRIM2P49643 509 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 MLF1P58340 268 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 MGAT2Q10469 447 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 TP53BP2Q13625 1128 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 EXOSC7Q15024 291 aaKnown RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 MAPKAPK3Q16644 382 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 MPEG1Q2M385 716 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 LINC00303Q3SY05 128 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 AGKQ53H12 422 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 TRMT12Q53H54 448 aaKnown RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 LINC00696Q6ZRV3 163 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ARMC10Q8N2F6 343 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ZADH2Q8N4Q0 377 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 TMEM156Q8N614 296 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 CPSF7Q8N684 471 aaKnown RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 SLC15A4Q8N697 577 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ZNF615Q8N8J6 731 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 OR7G2Q8NG99 324 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 OR9I1Q8NGQ6 314 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 C16orf52Q8NHV5 167 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 PSMA8Q8TAA3 256 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ASB15Q8WXK1 588 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 PSMF1Q92530 271 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 TP53INP1Q96A56 240 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 SPDL1Q96EA4 605 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ABHD17AQ96GS6 310 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ITCHQ96J02 903 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 MAGED4Q96JG8 741 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 CCDC115Q96NT0 180 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 PANX1Q96RD7 426 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 CDCP1Q9H5V8 836 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ZCCHC3Q9NUD5 404 aaKnown RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 CCDC167Q9P0B6 97 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 ZNF223Q9UK11 482 aaPredicted RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 ADAM21Q9UKJ8 722 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 VPS4AQ9UN37 437 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 HEMK1Q9Y5R4 338 aaPredicted RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 CAPN7Q9Y6W3 813 aa9.35□□□□□ -0.91
USP3-216ENST00000559873 DSPP15924 2871 aaKnown RBP9.35□□□□□ -0.91
USP3-216ENST00000559873 MED13Q9UHV7 2174 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 CROCCQ5TZA2 2017 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 OR5H15A6NDH6 313 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 C9JVG2 144 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 UPK1AO00322 258 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 RFXANKO14593 260 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 ERN1O75460 977 aaKnown RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 SOX30O94993 753 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 CPSF4O95639 269 aaKnown RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 EFNA1P20827 205 aaPredicted RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 IL12AP29459 219 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 KRT20P35900 424 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 CCT3P49368 545 aaKnown RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 CYB561P49447 251 aa9.34□□□□□ -0.91
USP3-216ENST00000559873 CDK9P50750 372 aaKnown RBP9.34□□□□□ -0.91
USP3-216ENST00000559873 ANXA11P50995 505 aaKnown RBP9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms