RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TP53INP1Q96A56 240 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 SENP5Q96HI0 755 aaPredicted RBP8.05□□□□□ -1.12
USP3-208ENST00000558285 MRPL1Q9BYD6 325 aaKnown RBP8.05□□□□□ -1.12
USP3-208ENST00000558285 AICDAQ9GZX7 198 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 EPB41L4BQ9H329 900 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 SAR1AQ9NR31 198 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 SACM1LQ9NTJ5 587 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 CNIH4Q9P003 139 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 MAPRE3Q9UPY8 281 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 TMA7Q9Y2S6 64 aaKnown RBP8.05□□□□□ -1.12
USP3-208ENST00000558285 PLLPQ9Y342 182 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 ASB4Q9Y574 426 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 PCDHA9Q9Y5H5 950 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 LAMA5O15230 3695 aa8.05□□□□□ -1.12
USP3-208ENST00000558285 C2orf92A0A1B0GVN3 265 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 A0A1W2PR48 441 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 TMEM114B3SHH9 223 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 TM9SF1O15321 606 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 NPHS1O60500 1241 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 DNAJB6O75190 326 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 EEDO75530 441 aaKnown RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 OR2J2O76002 312 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 F10P00742 488 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 ESRRAP11474 423 aaPredicted RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 ABOP16442 354 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 NTSP30990 170 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 TIA1P31483 386 aaKnown RBP eCLIP8.04□□□□□ -1.12
USP3-208ENST00000558285 KRT20P35900 424 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 ZNF763Q0D2J5 394 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 GALNT1Q10472 559 aaPredicted RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 C4orf17Q53FE4 359 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 C18orf63Q68DL7 685 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 SPINK14Q6IE38 97 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 SLC48A1Q6P1K1 146 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 LYPD8Q6UX82 237 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 GALNTL5Q7Z4T8 443 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 TRABD2AQ86V40 505 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 CROCCP3Q8IVE0 287 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 FAM9CQ8IZT9 166 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 LRRC25Q8N386 305 aaPredicted RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 TMEM151AQ8N4L1 468 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 KIF2BQ8N4N8 673 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 FITM2Q8N6M3 262 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 FAM13CQ8NE31 585 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 C17orf47Q8NEP4 570 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 CKAP2Q8WWK9 683 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 ANKRD9Q96BM1 317 aaPredicted RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 ITPKCQ96DU7 683 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 GAL3ST4Q96RP7 486 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 ZNF184Q99676 751 aaPredicted RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 MESP1Q9BRJ9 268 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 SORBS1Q9BX66 1292 aaKnown RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 SSU72Q9NP77 194 aaKnown RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 ANKRD10Q9NXR5 420 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 NKX1-2Q9UD57 310 aaPredicted RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 MED13Q9UHV7 2174 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 MRTO4Q9UKD2 239 aaKnown RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 BOKQ9UMX3 212 aaPredicted RBP8.04□□□□□ -1.12
USP3-208ENST00000558285 SCN3AQ9NY46 2000 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 NBEAQ8NFP9 2946 aa8.04□□□□□ -1.12
USP3-208ENST00000558285 ASPDHA6ND91 283 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 G3V2L1 256 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 PRRG2O14669 202 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 AZIN1O14977 448 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ACOX3O15254 700 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 PEX1O43933 1283 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 TMPRSS11DO60235 418 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ERAL1O75616 437 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 ZWINTO95229 277 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ATP1B1P05026 303 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ANXA4P09525 319 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 TSPAN8P19075 237 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ASMTP46597 345 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 HNRNPFP52597 415 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 SMSP52788 366 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 HK2P52789 917 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 EFNA3P52797 238 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ERVK-8P63133 956 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 SNRPNP63162 240 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 HPCAP84074 193 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ID2Q02363 134 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 SLC34A1Q06495 639 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 CYLC2Q14093 348 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 SF3B4Q15427 424 aaKnown RBP eCLIP8.03□□□□□ -1.122e-6■■■■□ 22.7
USP3-208ENST00000558285 PRR30Q53SZ7 412 aaPredicted RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 SLC22A10Q63ZE4 541 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 GALNT18Q6P9A2 607 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 RPTNQ6XPR3 784 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 LRRC74BQ6ZQY2 392 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 RNF165Q6ZSG1 346 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 R3HCC1LQ7Z5L2 792 aaKnown RBP8.03□□□□□ -1.12
USP3-208ENST00000558285 EXOC3L1Q86VI1 746 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 OR4N5Q8IXE1 308 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 CLYBLQ8N0X4 340 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 VWA5B2Q8N398 1253 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 NATD1Q8N6N6 113 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 BANPQ8N9N5 519 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 PSD4Q8NDX1 1056 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 TMEM52Q8NDY8 209 aa8.03□□□□□ -1.12
USP3-208ENST00000558285 ZFP28Q8NHY6 868 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms