RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	TRNT1	Q96Q11	434 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	TREX2	Q9BQ50	279 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	PELO	Q9BRX2	385 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	YIPF4	Q9BSR8	244 aa		11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	GTPBP2	Q9BX10	602 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	BTBD2	Q9BX70	525 aa		11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	LRRN3	Q9H3W5	708 aa		11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	REEP1	Q9H902	201 aa		11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	EQTN	Q9NQ60	294 aa		11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	SMPD3	Q9NY59	655 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	USE1	Q9NZ43	259 aa		11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	ABCG2	Q9UNQ0	655 aa		11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	PCDHGA5	Q9Y5G8	931 aa		11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	GPC6	Q9Y625	555 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	ARID1B	Q8NFD5	2236 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-233	ENST00000557529	DSCR3	O14972	297 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	ADAMDEC1	O15204	470 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	ZNF749	O43361	778 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	COQ9	O75208	318 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	ZNF883	P0CG24	379 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	FPR1	P21462	350 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	DNAJA1	P31689	397 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	MPL	P40238	635 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	GCGR	P47871	477 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	HPCA	P84074	193 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	MAT1A	Q00266	395 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	KCNC4	Q03721	635 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	MAP4K2	Q12851	820 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	EPS8	Q12929	822 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	SERTAD2	Q14140	314 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	GK3P	Q14409	553 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	PDK3	Q15120	406 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	SYPL1	Q16563	259 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	PRICKLE4	Q2TBC4	344 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	PROX2	Q3B8N5	592 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	IQCC	Q4KMZ1	466 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	NHSL2	Q5HYW2	709 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	OTUD3	Q5T2D3	398 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	C6orf52	Q5T4I8	152 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	SHQ1	Q6PI26	577 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	FAM111B	Q6SJ93	734 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	TTLL10	Q6ZVT0	673 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	C16orf62	Q7Z3J2	963 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	ST13P4	Q8IZP2	240 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	OR2I1P	Q8NGU4	316 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	MAGEE2	Q8TD90	523 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	CTHRC1	Q96CG8	243 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	RBM18	Q96H35	190 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	COL21A1	Q96P44	957 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	OR1F2P	Q96R84	312 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	RBM4B	Q9BQ04	359 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	RBM4	Q9BWF3	364 aa	Known RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	RUBCNL	Q9H714	662 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	TRIM45	Q9H8W5	580 aa	Predicted RBP	11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	FGF21	Q9NSA1	209 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	GIN1	Q9NXP7	522 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	MAT2B	Q9NZL9	334 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	SEC14L3	Q9UDX4	400 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	NDOR1	Q9UHB4	597 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	MMACHC	Q9Y4U1	282 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	PCDHGB3	Q9Y5G1	929 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529	PCDHGB2	Q9Y5G2	931 aa		11.68	□□□□□ -0.54
SHMT2-233	ENST00000557529		A0A1W2PQM1	296 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	PRAMEF27	A3QJZ7	478 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	MAGEA13P	A6NCF6	341 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	KHNYN	O15037	678 aa	Known RBP	11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	IFNW1	P05000	195 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ALPL	P05186	524 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ALOX5	P09917	674 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	CD247	P20963	164 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ALAS2	P22557	587 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	XCR1	P46094	333 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	KCNJ5	P48544	419 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	MGAT2	Q10469	447 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	DSG2	Q14126	1118 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	LPAL2	Q16609	132 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	GPAT3	Q53EU6	434 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	TRMT12	Q53H54	448 aa	Known RBP	11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	HEPHL1	Q6MZM0	1159 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ZNF574	Q6ZN55	896 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ARHGAP22	Q7Z5H3	698 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	GALNT12	Q8IXK2	581 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	VWA5B2	Q8N398	1253 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	CDRT4	Q8N9R6	151 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	SMYD1	Q8NB12	490 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	IFI44	Q8TCB0	444 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	TFAP2C	Q92754	450 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ZNF501	Q96CX3	271 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ZNF578	Q96N58	590 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	DGAT2	Q96PD7	388 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ZNF300	Q96RE9	604 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	EPYC	Q99645	322 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ADI1	Q9BV57	179 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	RBCK1	Q9BYM8	510 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	GABARAPL1	Q9H0R8	117 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ADAP2	Q9NPF8	381 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	NDUFAF4	Q9P032	175 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	SRPK3	Q9UPE1	567 aa		11.67	□□□□□ -0.54
SHMT2-233	ENST00000557529	SAMHD1	Q9Y3Z3	626 aa	Known RBP	11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms