RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ATP6V1HQ9UI12 483 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 PCDHGB6Q9Y5F9 930 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 NBASA2RRP1 2371 aa12.58□□□□□ -0.4
SHMT2-228ENST00000557302 GOLGA8QA0A0J9YX86 632 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 GOLGA8OA6NCC3 632 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 GOLGA8NF8WBI6 632 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 PLOD3O60568 738 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 OR6B1O95007 311 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 SP1P08047 785 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 PLA2G2AP14555 144 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 GPX3P22352 226 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 EPHA3P29320 983 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 SOX18P35713 384 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 DIO3P55073 304 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 DUSP8Q13202 625 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 CPTPQ5TA50 214 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 SLC25A25Q6KCM7 469 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 OGFOD2Q6N063 350 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 IL20RBQ6UXL0 311 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 ZNF227Q86WZ6 799 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 TAGAPQ8N103 731 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 SLC15A4Q8N697 577 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 KRTCAP2Q8N6L1 136 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 TMEM178AQ8NBL3 297 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 C17orf47Q8NEP4 570 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 OR7G2Q8NG99 324 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 OR7A2PQ8NGA2 310 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 ZFP28Q8NHY6 868 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 CKAP2Q8WWK9 683 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 TP53INP1Q96A56 240 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 CIDECQ96AQ7 238 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-228ENST00000557302 SNRNP40Q96DI7 357 aaKnown RBP12.57□□□□□ -0.4
SHMT2-228ENST00000557302 ZBED6CLQ96FA7 236 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-228ENST00000557302 SCMH1Q96GD3 660 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 MAGEB18Q96M61 343 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 PRPF18Q99633 342 aaKnown RBP12.57□□□□□ -0.4
SHMT2-228ENST00000557302 TRIM4Q9C037 500 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 WDR55Q9H6Y2 383 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-228ENST00000557302 SLCO1B3Q9NPD5 702 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 MED4Q9NPJ6 270 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 ATAD3AQ9NVI7 634 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 MAPRE3Q9UPY8 281 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 COPG1Q9Y678 874 aaKnown RBP12.57□□□□□ -0.4
SHMT2-228ENST00000557302 RP1L1Q8IWN7 2480 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-228ENST00000557302 CROCCQ5TZA2 2017 aa12.57□□□□□ -0.4
SHMT2-228ENST00000557302 A0A087WV62 115 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ZNF354AO60765 605 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-228ENST00000557302 NADKO95544 446 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-228ENST00000557302 GPC1P35052 558 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 MC3RP41968 323 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 NR0B1P51843 470 aaKnown RBP12.56□□□□□ -0.4
SHMT2-228ENST00000557302 MANFP55145 182 aaKnown RBP12.56□□□□□ -0.4
SHMT2-228ENST00000557302 CLDN8P56748 225 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 NRG3P56975 720 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 C21orf58P58505 322 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 HSPB3Q12988 150 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 MAPKAPK3Q16644 382 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 FHL5Q5TD97 284 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 NXNQ6DKJ4 435 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 FAM180AQ6UWF9 173 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 TMEM107Q6UX40 140 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ZNF551Q7Z340 670 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-228ENST00000557302 GALNTL5Q7Z4T8 443 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 RIMKLAQ8IXN7 391 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ARFGAP2Q8N6H7 521 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ZNF441Q8N8Z8 693 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 SIMC1Q8NDZ2 872 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ADIPOR1Q96A54 375 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ITPAQ9BY32 194 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 HES7Q9BYE0 225 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 DPY30Q9C005 99 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ANKRA2Q9H9E1 313 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 TIMMDC1Q9NPL8 285 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ACSS1Q9NUB1 689 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-228ENST00000557302 DDX18Q9NVP1 670 aaKnown RBP12.56□□□□□ -0.4
SHMT2-228ENST00000557302 ASF1BQ9NVP2 202 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 DTX4Q9Y2E6 619 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 USH1CQ9Y6N9 552 aa12.56□□□□□ -0.4
SHMT2-228ENST00000557302 FLNBO75369 2602 aaKnown RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 PLOD2O00469 737 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 NME2P1O60361 137 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 DIAPH2O60879 1101 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 COQ9O75208 318 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 RASAL1O95294 804 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 IFI6P09912 130 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 ALDOCP09972 364 aaKnown RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 LAMP1P11279 417 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 NME2P22392 152 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 FRKP42685 505 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 EMDP50402 254 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 DCAF7P61962 342 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 SLC9B1Q4ZJI4 515 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 RTL4Q6ZR62 310 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 RGS9BPQ6ZS82 235 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 FAM47EQ6ZV65 393 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 MAVSQ7Z434 540 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 MDGA2Q7Z553 956 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 SPATA19Q7Z5L4 167 aa12.55□□□□□ -0.4
SHMT2-228ENST00000557302 DND1Q8IYX4 353 aaKnown RBP12.55□□□□□ -0.4
SHMT2-228ENST00000557302 NATD1Q8N6N6 113 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms