RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 P2RX2Q9UBL9 471 aa8.35□□□□□ -1.07
TDP1-210ENST00000554976 FER1L5A0AVI2 2057 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 CASC3O15234 703 aaKnown RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 B4GAT1O43505 415 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ERAL1O75616 437 aaKnown RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 CLPSP04118 112 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 RPS4Y1P22090 263 aaKnown RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 PRIM2P49643 509 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 CLK3P49761 638 aaKnown RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 SRSF5Q13243 272 aaKnown RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 OTUD3Q5T2D3 398 aaPredicted RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 NKAIN2Q5VXU1 208 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 MFSD12Q6NUT3 480 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 KLHL35Q6PF15 583 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 FAM92BQ6ZTR7 304 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 BBS10Q8TAM1 723 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 GAB3Q8WWW8 586 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ZNF354BQ96LW1 612 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ZNF347Q96SE7 839 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 CD180Q99467 661 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 PITX2Q99697 317 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 GIN1Q9NXP7 522 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 LAMA1P25391 3075 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 TMEM247A6NEH6 219 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ZNF860A6NHJ4 632 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 FAM227AF5H4B4 570 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 SGK494L7N484 410 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 MITFO75030 526 aaPredicted RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 SLITRK5O94991 958 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 CT62P0C5K7 136 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ACP2P11117 423 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ETS2P15036 469 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ZNF10P21506 573 aaPredicted RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 CD1CP29017 333 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 RRM2P31350 389 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 GPR3P46089 330 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 OR1E2P47887 323 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 XKP51811 444 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 SHC2P98077 582 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 SQSTM1Q13501 440 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 TP53BP2Q13625 1128 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 FAM53BQ14153 422 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 CTU2Q2VPK5 515 aaKnown RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 CDC73Q6P1J9 531 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 OLIG3Q7RTU3 272 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 PRSS42Q7Z5A4 293 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 CCDC71Q8IV32 467 aaPredicted RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 CHDHQ8NE62 594 aaPredicted RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 SLC35A4Q96G79 324 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ZC3H10Q96K80 434 aaKnown RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 MUS81Q96NY9 551 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 MS4A4EQ96PG1 132 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ACTRT3Q9BYD9 372 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 MAT2BQ9NZL9 334 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 TMEM9Q9P0T7 183 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 C19orf53Q9UNZ5 99 aaPredicted RBP8.34□□□□□ -1.07
TDP1-210ENST00000554976 ZNF780BQ9Y6R6 833 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 ENPP4Q9Y6X5 453 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 MUC3AQ02505 3323 aa8.34□□□□□ -1.07
TDP1-210ENST00000554976 SCN2AQ99250 2005 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 PLOD3O60568 738 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 RDH16O75452 317 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 NSA2O95478 260 aaKnown RBP8.33□□□□□ -1.08
TDP1-210ENST00000554976 PNLIPP16233 465 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 CDH3P22223 829 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 EPHA8P29322 1005 aaPredicted RBP8.33□□□□□ -1.08
TDP1-210ENST00000554976 ALDH3B2P48448 385 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 C21orf59P57076 290 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 ISL1P61371 349 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 EPS8Q12929 822 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 KCNAB2Q13303 367 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 COL9A2Q14055 689 aaPredicted RBP8.33□□□□□ -1.08
TDP1-210ENST00000554976 KEAP1Q14145 624 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 LAPTM4AQ15012 233 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 PLK5Q496M5 336 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 CYP27C1Q4G0S4 372 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 LAIR1Q6GTX8 287 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 SAMD14Q8IZD0 417 aaPredicted RBP8.33□□□□□ -1.08
TDP1-210ENST00000554976 OFCC1Q8IZS5 231 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 OR9A4Q8NGU2 314 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 KAT2AQ92830 837 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 EDAQ92838 391 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 TANKQ92844 425 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 ELF4Q99607 663 aaPredicted RBP8.33□□□□□ -1.08
TDP1-210ENST00000554976 SLC38A3Q99624 504 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 PIP5K1AQ99755 562 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 ARHGDIGQ99819 225 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 LRIT1Q9P2V4 623 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 NDRG4Q9ULP0 352 aaKnown RBP8.33□□□□□ -1.08
TDP1-210ENST00000554976 U3KQV3 271 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 A0A0G2JPF8 293 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 HNRNPCL2B2RXH8 293 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 HNRNPCL3B7ZW38 293 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 LDB3O75112 727 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 GPR75O95800 540 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 IFNA14P01570 189 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 HNRNPCP07910 306 aaKnown RBP eCLIP8.33□□□□□ -1.08
TDP1-210ENST00000554976 HNRNPCL4P0DMR1 293 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 GLB1P16278 677 aa8.33□□□□□ -1.08
TDP1-210ENST00000554976 PORP16435 677 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms