RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RHBGQ9H310 441 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 KLHL31Q9H511 634 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 DYRK4Q9NR20 520 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ZCCHC3Q9NUD5 404 aaKnown RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 AHSPQ9NZD4 102 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MARK1Q9P0L2 795 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SEC14L4Q9UDX3 406 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 ACAD8Q9UKU7 415 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 SPIN1Q9Y657 262 aaPredicted RBP7.08□□□□□ -1.28
LIMA1-213ENST00000552720 C2orf16Q68DN1 1984 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 MYO15AQ9UKN7 3530 aa7.08□□□□□ -1.28
LIMA1-213ENST00000552720 IGKV1-8A0A0C4DH67 115 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 C17orf113A0A1B0GUU1 675 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 KIAA0355O15063 1070 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 ERAL1O75616 437 aaKnown RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CSF2P04141 144 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 PRNPP04156 253 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 PCCBP05166 539 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CHRM4P08173 479 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 ITGB7P26010 798 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SDC2P34741 201 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 TIE1P35590 1138 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SOX18P35713 384 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 BUD31P41223 144 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 FRKP42685 505 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 GIPRP48546 466 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 GAS1P54826 345 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 RACK1P63244 317 aaKnown RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 HOXC5Q00444 222 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 MLLT11Q13015 90 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 INSL4Q14641 139 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CCDC92Q53HC0 331 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 MEDAGQ5VYS4 303 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 FAM131AQ6UXB0 335 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 AMZ2Q86W34 360 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 DCUN1D3Q8IWE4 304 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SLC30A8Q8IWU4 369 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CAMKK1Q8N5S9 505 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 MORN4Q8NDC4 146 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 OR8D4Q8NGM9 314 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SLC9A6Q92581 669 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 C16orf58Q96GQ5 468 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF582Q96NG8 517 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 DCLRE1CQ96SD1 692 aaKnown RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF607Q96SK3 696 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 NELL2Q99435 816 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 AIF1LQ9BQI0 150 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 DPH7Q9BTV6 452 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 FNDC11Q9BVV2 318 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 BEX2Q9BXY8 128 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SYNPO2LQ9H987 977 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 C3orf14Q9HBI5 128 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 NEUROD4Q9HD90 331 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 DDX28Q9NUL7 540 aaKnown RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CNIH4Q9P003 139 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 PLEKHB1Q9UF11 243 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 TESQ9UGI8 421 aaKnown RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF221Q9UK13 617 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 FBXW2Q9UKT8 454 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 HCN2Q9UL51 889 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 TRAPPC4Q9Y296 219 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SPTBN5Q9NRC6 3674 aaKnown RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 LAMA1P25391 3075 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 A0A1W2PQL4 384 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 PGRMC2O15173 223 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 FKTNO75072 461 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 PDE9AO76083 593 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CH25HO95992 272 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 LALBAP00709 142 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 GNRH1P01148 92 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 KRT8P05787 483 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF16P17020 682 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CLCNKAP51800 687 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 HYAL2Q12891 473 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 LASP1Q14847 261 aaKnown RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SNAPC1Q16533 368 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 OCLNQ16625 522 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CLEC12AQ5QGZ9 265 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 NDUFAF5Q5TEU4 345 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 ZNF517Q6ZMY9 492 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 GLCCI1Q86VQ1 547 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 NUDT13Q86X67 352 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 KRT73Q86Y46 540 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 FLCNQ8NFG4 579 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 PROKR2Q8NFJ6 384 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 OR5K2Q8NHB8 316 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 CREB3L4Q8TEY5 395 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 FGF11Q92914 225 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SLC25A46Q96AG3 418 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 TRIM43Q96BQ3 446 aaPredicted RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 ST6GAL2Q96JF0 529 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 TOX2Q96NM4 488 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 AMDHD1Q96NU7 426 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 TRMT61BQ9BVS5 477 aaKnown RBP7.07□□□□□ -1.28
LIMA1-213ENST00000552720 PLSCR3Q9NRY6 295 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 P2RX2Q9UBL9 471 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 MALT1Q9UDY8 824 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 IL20RAQ9UHF4 553 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 SSR3Q9UNL2 185 aa7.07□□□□□ -1.28
LIMA1-213ENST00000552720 GPR34Q9UPC5 381 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms