RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 C9orf64Q5T6V5 341 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ANXA8L1Q5VT79 327 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ANKRD54Q6NXT1 300 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 C8orf82Q6P1X6 216 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 ALKAL1Q6UXT8 129 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 BEND4Q6ZU67 534 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 OVCH2Q7RTZ1 564 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CELF5Q8N6W0 485 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 CSGALNACT1Q8TDX6 532 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 MRPS31Q92665 395 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 TEFMQ96QE5 360 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 POFUT1Q9H488 388 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 TUBB1Q9H4B7 451 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 AHSPQ9NZD4 102 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 HCN3Q9P1Z3 774 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 VPS29Q9UBQ0 182 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 NEU3Q9UQ49 428 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 B3GNT3Q9Y2A9 372 aa5.21□□□□□ -1.58
LIMA1-203ENST00000547825 RPL36Q9Y3U8 105 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 TPRP12270 2363 aaKnown RBP5.21□□□□□ -1.58
LIMA1-203ENST00000547825 DNAJC13O75165 2243 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 A0A0G2JPF8 293 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ABHD14A-ACY1A0A1B0GW23 586 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ANKRD66B4E2M5 251 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 HNRNPCL3B7ZW38 293 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PQBP1O60828 265 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 C6orf47O95873 294 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 IGSF6O95976 241 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 IFNA7P01567 189 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 HNRNPCL4P0DMR1 293 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 RHCEP18577 417 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PRPS1L1P21108 318 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 DNASE1P24855 282 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ITGA3P26006 1051 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ERP29P30040 261 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 OR1D2P34982 312 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 RPL4P36578 427 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TGFBR2P37173 567 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TGM4P49221 684 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PGFP49763 221 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 GP2P55259 537 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 MRPS6P82932 125 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CACNG1Q06432 222 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 MAD2L1BPQ15013 274 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TATDN3Q17R31 274 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PARP15Q460N3 678 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 HECTD3Q5T447 861 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 NADSYN1Q6IA69 706 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 GDPD3Q7L5L3 318 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 LAX1Q8IWV1 398 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TOMM5Q8N4H5 51 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 WDR48Q8TAF3 677 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 MUL1Q969V5 352 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 COQ8BQ96D53 544 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SCARF2Q96GP6 870 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CSF3RQ99062 836 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CTRCQ99895 268 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 FUZQ9BT04 418 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TSSK6Q9BXA6 273 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 FBXO10Q9UK96 956 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PCTPQ9UKL6 214 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PCDHB7Q9Y5E2 793 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CHD5Q8TDI0 1954 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 LOC100509620A0A075B734 347 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 CLCA1A8K7I4 914 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 M0R233 179 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PCDH7O60245 1069 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PDYNP01213 254 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SPNP16150 400 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SLC6A4P31645 630 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 IFNGR2P38484 337 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 MAPKAPK2P49137 400 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SMSP52788 366 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 YBEYP58557 167 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 DEFB103AP81534 67 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 IL10RBQ08334 325 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SLAMF1Q13291 335 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 KIR3DS1Q14943 382 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 GPR68Q15743 365 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 DUOXA1Q1HG43 343 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 HYAL4Q2M3T9 481 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 LEXMQ3ZCV2 418 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 LRRC37A5PQ49AS3 106 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SFRP4Q6FHJ7 346 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SLC25A25Q6KCM7 469 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 IKBIPQ70UQ0 350 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SPRED2Q7Z698 418 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 SPRED1Q7Z699 444 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 TAF8Q7Z7C8 310 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 RNF130Q86XS8 419 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 PELI3Q8N2H9 469 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ZMIZ2Q8NF64 920 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 OR8J3Q8NGG0 315 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ADAMTS16Q8TE57 1224 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 DNASE1L2Q92874 299 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 IGSF8Q969P0 613 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 MAELQ96JY0 434 aaKnown RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF583Q96ND8 569 aa5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ERMAPQ96PL5 475 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-203ENST00000547825 ZNF607Q96SK3 696 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms