RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	ZNF24	P17028	368 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	TLX1	P31314	330 aa	Predicted RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	BSG	P35613	385 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	BUD31	P41223	144 aa	Predicted RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	CA7	P43166	264 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	STT3A	P46977	705 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	SSR4	P51571	173 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	HNRNPH2	P55795	449 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	KCNK10	P57789	538 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	HERVK_113	P63132	956 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	OCRL	Q01968	901 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ALDH6A1	Q02252	535 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	RBPJ	Q06330	500 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	SLAMF1	Q13291	335 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ZRSR2	Q15696	482 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	MAPKAPK3	Q16644	382 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	KRTCAP3	Q53RY4	240 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	FRG2	Q64ET8	278 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	SLC25A25	Q6KCM7	469 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	HSDL2	Q6YN16	418 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	GPR180	Q86V85	440 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	KIF18B	Q86Y91	864 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	CYP4Z2P	Q8N1L4	340 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	RNF175	Q8N4F7	328 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	TMEM156	Q8N614	296 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	POGLUT1	Q8NBL1	392 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	UHMK1	Q8TAS1	419 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	SLC2A12	Q8TD20	617 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ACMSD	Q8TDX5	336 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ZNF483	Q8TF39	744 aa	Predicted RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	PTPMT1	Q8WUK0	201 aa	Predicted RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	TANK	Q92844	425 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	RELT	Q969Z4	430 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ATP6V1E2	Q96A05	226 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ANKRD9	Q96BM1	317 aa	Predicted RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	PHF21B	Q96EK2	531 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ART5	Q96L15	291 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	GPR137	Q96N19	417 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	FRG2B	Q96QU4	278 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	SERPINI1	Q99574	410 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	RHOXF2	Q9BQY4	288 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	PELO	Q9BRX2	385 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	SORBS1	Q9BX66	1292 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ERVK-6	Q9BXR3	956 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	RPF2	Q9H7B2	306 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ZBTB26	Q9HCK0	441 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	ZFP64	Q9NPA5	681 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	MBNL3	Q9NUK0	354 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	MYOT	Q9UBF9	498 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	COPS7A	Q9UBW8	275 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	FBXW2	Q9UKT8	454 aa		7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440	YARS2	Q9Y2Z4	477 aa	Known RBP	7.12	□□□□□ -1.27
SNHG1-223	ENST00000545440		A1L4Q6	167 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	TMEM200C	A6NKL6	621 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	CYSRT1	A8MQ03	144 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	PROM1	O43490	865 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	TMPRSS11D	O60235	418 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	PRKN	O60260	465 aa	Predicted RBP	7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	SLC19A2	O60779	497 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	OR2J2	O76002	312 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	CLDN1	O95832	211 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	IGKV3-11	P04433	115 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	SBK3	P0C264	359 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	TAC1	P20366	129 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	TNFRSF8	P28908	595 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	GALNS	P34059	522 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	GP2	P55259	537 aa	Known RBP	7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	FOLH1	Q04609	750 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	IFT88	Q13099	833 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	FAM153C	Q494X1	144 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	C1QL3	Q5VWW1	255 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	OR52E8	Q6IFG1	317 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	MTFR2	Q6P444	385 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	CYP20A1	Q6UW02	462 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	FJX1	Q86VR8	437 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	SIAH3	Q8IW03	269 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	ST13P4	Q8IZP2	240 aa	Predicted RBP	7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	CPSF7	Q8N684	471 aa	Known RBP	7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	PSD4	Q8NDX1	1056 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	MYRIP	Q8NFW9	859 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	OR4F6	Q8NGB9	312 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	OR5L2	Q8NGL0	311 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	NUBPL	Q8TB37	319 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	ZNF721	Q8TF20	911 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	ASB15	Q8WXK1	588 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	FBXL20	Q96IG2	436 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	KIRREL1	Q96J84	757 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	MAGED4	Q96JG8	741 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	DGAT2	Q96PD7	388 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	RASL10B	Q96S79	203 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	OR8D2	Q9GZM6	311 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	EPB41L4B	Q9H329	900 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	ELOVL6	Q9H5J4	265 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	L2HGDH	Q9H9P8	463 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	PPCS	Q9HAB8	311 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	WDR41	Q9HAD4	459 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	BRF2	Q9HAW0	419 aa		7.11	□□□□□ -1.27
SNHG1-223	ENST00000545440	SEMA4B	Q9NPR2	832 aa	Predicted RBP	7.11	□□□□□ -1.27

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms