RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 PDYNP01213 254 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 ABHD2P08910 425 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 ABCD3P28288 659 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 TRPC1P48995 793 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 CDK9P50750 372 aaKnown RBP12.03□□□□□ -0.48
RTN3-213ENST00000543552 KRTAP10-9P60411 292 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 DCAF7P61962 342 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 PSPHP78330 225 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 MAP4K2Q12851 820 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 CSTF3Q12996 717 aaKnown RBP12.03□□□□□ -0.48
RTN3-213ENST00000543552 DUSP8Q13202 625 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 RASA2Q15283 850 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 TOMM20Q15388 145 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 TEX35Q5T0J7 233 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 LETMD1Q6P1Q0 360 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 LACC1Q8IV20 430 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 ADIPOR1Q96A54 375 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 TMEM41AQ96HV5 264 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 BRINP2Q9C0B6 783 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 METTL7AQ9H8H3 244 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 VPS29Q9UBQ0 182 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 PRODH2Q9UF12 536 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 BCAP29Q9UHQ4 241 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 DMGDHQ9UI17 866 aaKnown RBP12.03□□□□□ -0.48
RTN3-213ENST00000543552 ANKHD1Q8IWZ3 2542 aaKnown RBP12.03□□□□□ -0.48
RTN3-213ENST00000543552 HIVEP1P15822 2718 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 KIF2AO00139 706 aaPredicted RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 PPM1BO75688 479 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 ESRRBO95718 433 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 HPNP05981 417 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 CT62P0C5K7 136 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 RHOXF2BP0C7M4 288 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 CD1EP15812 388 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 POU3F2P20265 443 aaPredicted RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 GPX3P22352 226 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 ADH7P40394 386 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 ALDH9A1P49189 494 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 RIPPLY3P57055 190 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 CLCQ05315 142 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 PLCXD2Q0VAA5 305 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 GALNT1Q10472 559 aaPredicted RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 SNTA1Q13424 505 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 ACSF3Q4G176 576 aaPredicted RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 UBAP2Q5T6F2 1119 aaKnown RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 TMEM81Q6P7N7 255 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 ARSKQ6UWY0 536 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 TMEM64Q6YI46 380 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 SPNS3Q6ZMD2 512 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 TRMT10CQ7L0Y3 403 aaKnown RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 NUP54Q7Z3B4 507 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 SLC22A9Q8IVM8 553 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 GBP7Q8N8V2 638 aaPredicted RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 NOA1Q8NC60 698 aaKnown RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 UCN3Q969E3 161 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 ERP27Q96DN0 273 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 LCORQ96JN0 433 aaPredicted RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 ZNF382Q96SR6 550 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 SHCBP1LQ9BZQ2 653 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 GIMAP4Q9NUV9 329 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 FOXD3Q9UJU5 478 aaPredicted RBP12.02□□□□□ -0.49
RTN3-213ENST00000543552 CES1P1Q9UKY3 287 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 EDARQ9UNE0 448 aa12.02□□□□□ -0.49
RTN3-213ENST00000543552 A0A1W2PS29 197 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 BCAS2O75934 225 aaPredicted RBP12.01□□□□□ -0.49
RTN3-213ENST00000543552 SUPT7LO94864 414 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 EPPINO95925 133 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 IL2RAP01589 272 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 ECHS1P30084 290 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 HMOX2P30519 316 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 TIMP3P35625 211 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 HSD17B3P37058 310 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 FEN1P39748 380 aaKnown RBP12.01□□□□□ -0.49
RTN3-213ENST00000543552 CASP3P42574 277 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 ASCL1P50553 236 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 CDH13P55290 713 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 CRYZQ08257 329 aaKnown RBP12.01□□□□□ -0.49
RTN3-213ENST00000543552 PRICKLE4Q2TBC4 344 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 SPIN4Q56A73 249 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 NHSL2Q5HYW2 709 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 TIGD3Q6B0B8 471 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 SLC30A6Q6NXT4 461 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 TIFABQ6ZNK6 161 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 GPRIN3Q6ZVF9 776 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 IFT20Q8IY31 132 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 PRR22Q8IZ63 422 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 C1orf52Q8N6N3 182 aaKnown RBP12.01□□□□□ -0.49
RTN3-213ENST00000543552 OR1J4Q8NGS1 313 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 UHMK1Q8TAS1 419 aaKnown RBP12.01□□□□□ -0.49
RTN3-213ENST00000543552 GNRHR2Q96P88 292 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 TIMP4Q99727 224 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 OSBPL11Q9BXB4 747 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 ITPAQ9BY32 194 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 PRDM14Q9GZV8 571 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 NXF5Q9H1B4 397 aaKnown RBP12.01□□□□□ -0.49
RTN3-213ENST00000543552 UBQLN3Q9H347 655 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 PFDN4Q9NQP4 134 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 FARSBQ9NSD9 589 aaKnown RBP12.01□□□□□ -0.49
RTN3-213ENST00000543552 MAT2BQ9NZL9 334 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 KLRF1Q9NZS2 232 aa12.01□□□□□ -0.49
RTN3-213ENST00000543552 ZNF629Q9UEG4 869 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms