RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 KLF8O95600 359 aaPredicted RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 VIPP01282 170 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 IGLV3-19P01714 112 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 RPLP0P05388 317 aaKnown RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 SLC35G6P0C7Q6 338 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 NR2F6P10588 404 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ACADMP11310 421 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 RCVRNP35243 200 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 MAN2A2P49641 1150 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 TNFRSF17Q02223 184 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 SMN1Q16637 294 aaKnown RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 TIGD6Q17RP2 521 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ATAD3BQ5T9A4 648 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 HEPHL1Q6MZM0 1159 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 PGBD2Q6P3X8 592 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 ZCCHC12Q6PEW1 402 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 MRGPREQ86SM8 312 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 SLCO6A1Q86UG4 719 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 PEX5LQ8IYB4 626 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 OR6Q1Q8NGQ2 317 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 EFHD2Q96C19 240 aaPredicted RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 LGALS12Q96DT0 336 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 POLDIP3Q9BY77 421 aaKnown RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 ACTRT3Q9BYD9 372 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 PRRG3Q9BZD7 231 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 XKR8Q9H6D3 395 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 LYRM4Q9HD34 91 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 PRDM8Q9NQV8 689 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 POT1Q9NUX5 634 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 CLEC1BQ9P126 229 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 PTGFRNQ9P2B2 879 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 IFT52Q9Y366 437 aa9.3□□□□□ -0.92
SS18-205ENST00000542420 RPL36Q9Y3U8 105 aaKnown RBP9.3□□□□□ -0.92
SS18-205ENST00000542420 EFCAB9A8MZ26 197 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 TLR4O00206 839 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 TAF4O00268 1085 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 KPNA4O00629 521 aaPredicted RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 LINC01565O15544 149 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 LATO43561 262 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 ZBTB11O95625 1053 aaPredicted RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 ENDOUP21128 410 aaKnown RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 CD40LGP29965 261 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 AKT2P31751 481 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 PBX2P40425 430 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 IDH2P48735 452 aaKnown RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 CCR5P51681 352 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 SEC23BQ15437 767 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 KCNJ8Q15842 424 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 RPS26P11Q5JNZ5 115 aaPredicted RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 TJAP1Q5JTD0 557 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 PLAG1Q6DJT9 500 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 CCDC81Q6ZN84 652 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 PTCHD4Q6ZW05 846 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 FBXL6Q8N531 539 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 FAM26EQ8N5C1 309 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 ZNF655Q8N720 491 aaPredicted RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 CAMKVQ8NCB2 501 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 GALNT6Q8NCL4 622 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 OR52J3Q8NH60 311 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 FLVCR1-AS1Q8TAF5 88 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 ZNF675Q8TD23 568 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 UTP15Q8TED0 518 aaKnown RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 OR1E3Q8WZA6 343 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 NACC2Q96BF6 587 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 CNRIP1Q96F85 164 aaPredicted RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 MCOLN1Q9GZU1 580 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 KLHL31Q9H511 634 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 MRPS18AQ9NVS2 196 aaKnown RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 APOBEC3BQ9UH17 382 aaKnown RBP9.29□□□□□ -0.92
SS18-205ENST00000542420 ATG4BQ9Y4P1 393 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 PCDHGA3Q9Y5H0 932 aa9.29□□□□□ -0.92
SS18-205ENST00000542420 TRBV4-1A0A0J9YWV2 114 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 PRAMEF27A3QJZ7 478 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ANKRD34BA5PLL1 514 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 EPOPA6NHQ4 379 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 SNTNA6NMZ2 147 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ISM1B1AKI9 464 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 M0R082 166 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 AK1P00568 194 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ASGR2P07307 311 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ADORA3P0DMS8 318 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 COL9A1P20849 921 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 SLC19A1P41440 591 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 SEC13P55735 322 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 EXOSC6Q5RKV6 272 aaKnown RBP9.28□□□□□ -0.92
SS18-205ENST00000542420 CDC73Q6P1J9 531 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 CASP12Q6UXS9 341 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ADCK1Q86TW2 530 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 AMER3Q8N944 861 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 TMEM145Q8NBT3 493 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 OR8K5Q8NH50 307 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 RAB8BQ92930 207 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 ELP4Q96EB1 424 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 C10orf90Q96M02 699 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 MS4A4EQ96PG1 132 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 FNDC11Q9BVV2 318 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 TMEM121BQ9BXQ6 578 aaPredicted RBP9.28□□□□□ -0.92
SS18-205ENST00000542420 NDEL1Q9GZM8 345 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 SRMSQ9H3Y6 488 aa9.28□□□□□ -0.92
SS18-205ENST00000542420 CERS4Q9HA82 394 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms