RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 RSPH9Q9H1X1 276 aaPredicted RBP11.83□□□□□ -0.52
RNF4-222ENST00000541204 WDR70Q9NW82 654 aa11.83□□□□□ -0.52
RNF4-222ENST00000541204 SEC14L4Q9UDX3 406 aa11.83□□□□□ -0.52
RNF4-222ENST00000541204 PCDHGB2Q9Y5G2 931 aa11.83□□□□□ -0.52
RNF4-222ENST00000541204 A0A1W2PQ09 198 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 ZNF670-ZNF695F2Z2N8 137 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 SH3BP5O60239 455 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 CDRT1O95170 752 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 HOXB3P14651 431 aaPredicted RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 TNNI3P19429 210 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 DAB2P98082 770 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 RUNX1T1Q06455 604 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TARDBPQ13148 414 aaKnown RBP eCLIP11.82□□□□□ -0.52
RNF4-222ENST00000541204 NCF4Q15080 339 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 UAP1L1Q3KQV9 507 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 RAB43Q86YS6 212 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 NANOGP1Q8N7R0 232 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 AMER3Q8N944 861 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 SETD7Q8WTS6 366 aaKnown RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 TMEM203Q969S6 136 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 UBE2E3Q969T4 207 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 MTERF3Q96E29 417 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 ST6GAL2Q96JF0 529 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 POLR2J3Q9H1A7 115 aaKnown RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 MMP28Q9H239 520 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 NDUFB11Q9NX14 153 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 SPATA7Q9P0W8 599 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 KLHL20Q9Y2M5 609 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 GRIP1Q9Y3R0 1128 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 USP34Q70CQ2 3546 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3DA0A087WVF3 549 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3IA0A087WXS9 549 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3EA0A087X179 549 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3KA0A087X1G2 549 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 A0A1W2PQU0 124 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 HYKKA2RU49 373 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3FA6NER0 549 aaPredicted RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3LB9A6J9 549 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 PLD2O14939 933 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 LCMT2O60294 686 aaKnown RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 TPST2O60704 377 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3HP0C7X1 549 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 ENDOUP21128 410 aaKnown RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 MADCAM1Q13477 382 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 MLF2Q15773 248 aaPredicted RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 ITPRIPL2Q3MIP1 535 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 ZFP69Q49AA0 526 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 KHDRBS2Q5VWX1 349 aaKnown RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 MEDAGQ5VYS4 303 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 C12orf73Q69YU5 71 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3GQ6DHY5 549 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3CQ6IPX1 549 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 PHC2Q8IXK0 858 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TBC1D3Q8IZP1 549 aaPredicted RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 AIF1LQ9BQI0 150 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 SRRQ9GZT4 340 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TRPV4Q9HBA0 871 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 TVP23BQ9NYZ1 205 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 SSR3Q9UNL2 185 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 MGAT4BQ9UQ53 548 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 RPL36Q9Y3U8 105 aaKnown RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 CMAHPQ9Y471 501 aa11.82□□□□□ -0.52
RNF4-222ENST00000541204 KIF26AQ9ULI4 1882 aaPredicted RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 MUC22E2RYF6 1773 aaPredicted RBP11.82□□□□□ -0.52
RNF4-222ENST00000541204 SMIM30A4D0T7 59 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 GLOD5A6NK44 160 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 PRKRAO75569 313 aaKnown RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 H1F0P07305 194 aaKnown RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 CCR8P51685 355 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 MANFP55145 182 aaKnown RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 MRPS15P82914 257 aaKnown RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 RPA4Q13156 261 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 SLAMF1Q13291 335 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 TMEM201Q5SNT2 666 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 MFSD4BQ5TF39 518 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 PGBD2Q6P3X8 592 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 FAM131AQ6UXB0 335 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 GDPGP1Q6ZNW5 385 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 RD3Q7Z3Z2 195 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 TRIM69Q86WT6 500 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 SLC30A8Q8IWU4 369 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 PHOX2BQ99453 314 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 TRMT61BQ9BVS5 477 aaKnown RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 MVB12BQ9H7P6 319 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 ABCB9Q9NP78 766 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 SEMA3GQ9NS98 782 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 CA5BQ9Y2D0 317 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 BOLA1Q9Y3E2 137 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 A0A1W2PPV9 198 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 MEIOCA2RUB1 952 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 FAM172BPA6NC97 362 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 MYL12BO14950 172 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 TLX2O43763 284 aaPredicted RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 B4GALT2O60909 372 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 CLEC2LP0C7M8 214 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 RACK1P63244 317 aaKnown RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 PIN1Q13526 163 aaPredicted RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 HEPACAMQ14CZ8 416 aa11.81□□□□□ -0.52
RNF4-222ENST00000541204 LARS2Q15031 903 aaKnown RBP11.81□□□□□ -0.52
RNF4-222ENST00000541204 TBRG1Q3YBR2 411 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms