RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 TSPAN6O43657 245 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 LRATO95237 230 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 PDYNP01213 254 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 ANXA3P12429 323 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 HOXB1P14653 301 aaPredicted RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 AQP1P29972 269 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 CSTF1Q05048 431 aaKnown RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 ZNF805Q5CZA5 627 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 PSRC1Q6PGN9 363 aaPredicted RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 TFAP2EQ6VUC0 442 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 GHDCQ8N2G8 530 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 STPG2Q8N412 459 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 DUSP18Q8NEJ0 188 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SP7Q8TDD2 431 aaPredicted RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 ASB11Q8WXH4 323 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 INPP5KQ9BT40 448 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 NUP214P35658 2090 aaPredicted RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 SZT2Q5T011 3432 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 TCRBV16S1A1N1A0A5B0 115 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SIGLEC5O15389 551 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 C1QCP02747 245 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 EPORP19235 508 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 CXCL3P19876 107 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 STOMP27105 288 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SDC2P34741 201 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SIGLEC14Q08ET2 396 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 DSG2Q14126 1118 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SYTL3Q4VX76 610 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 FNDC3BQ53EP0 1204 aaKnown RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 PARS2Q7L3T8 475 aaKnown RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 KIAA0907Q7Z7F0 614 aaPredicted RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 PDZD3Q86UT5 571 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 OR11H7Q8NGC8 314 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 OR8D4Q8NGM9 314 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 C9orf43Q8TAL5 461 aaPredicted RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 MED8Q96G25 268 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 TSSK3Q96PN8 268 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 POLR2J2Q9GZM3 115 aaKnown RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 RLIMQ9NVW2 624 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SLC9A8Q9Y2E8 581 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 GOLGA4Q13439 2230 aaKnown RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 FAM220BPB1ANY3 271 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 ZNF197O14709 1029 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 EBLN1P0CF75 366 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 PUDPQ08623 228 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 EIF4HQ15056 248 aaKnown RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 CCSMST1Q4G0I0 132 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 USP39Q53GS9 565 aaKnown RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 OR4F3Q6IEY1 312 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 FAHD1Q6P587 224 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SUSD1Q6UWL2 747 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 TRIM69Q86WT6 500 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SLC5A8Q8N695 610 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 CELF5Q8N6W0 485 aaKnown RBP13.24□□□□□ -0.29
LIG1-203ENST00000536218 IL4I1Q96RQ9 567 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 SLC12A9Q9BXP2 914 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 LDAHQ9H6V9 325 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 TAS2R7Q9NYW3 318 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 MGAT4BQ9UQ53 548 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 CCL27Q9Y4X3 112 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 STON1Q9Y6Q2 735 aa13.24□□□□□ -0.29
LIG1-203ENST00000536218 IGLV3-16A0A075B6K0 115 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 LOC105369274A0A096LPK9 316 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 HCN1O60741 890 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 CCNDBP1O95273 360 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 CBX7O95931 251 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 CBSLP0DN79 551 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 DNASE1P24855 282 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 CBSP35520 551 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 CRYBB2P43320 205 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 CAPZA2P47755 286 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 AGFG1P52594 562 aaKnown RBP13.23□□□□□ -0.29
LIG1-203ENST00000536218 DCDC1P59894 354 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 FLI1Q01543 452 aaPredicted RBP13.23□□□□□ -0.29
LIG1-203ENST00000536218 ATRAIDQ6UW56 229 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 RASGRP3Q8IV61 690 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 OR4N4Q8N0Y3 316 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 SLC25A46Q96AG3 418 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 IGFLR1Q9H665 355 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 RDH14Q9HBH5 336 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 KCMF1Q9P0J7 381 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 SEC14L4Q9UDX3 406 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 KPNA5O15131 536 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 HPGDSO60760 199 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 HNRNPA1P09651 372 aaKnown RBP eCLIP13.23□□□□□ -0.29
LIG1-203ENST00000536218 BICRALQ6AI39 1079 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 TMEM220Q6QAJ8 160 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 RASGEF1AQ8N9B8 481 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 FAM181AQ8N9Y4 354 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 ASZ1Q8WWH4 475 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 CXorf58Q96LI9 332 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 IER2Q9BTL4 223 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 NTMT1Q9BV86 223 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 ACPTQ9BZG2 426 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 FOLH1BQ9HBA9 442 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 STUB1Q9UNE7 303 aa13.23□□□□□ -0.29
LIG1-203ENST00000536218 SLC28A1O00337 649 aa13.22□□□□□ -0.29
LIG1-203ENST00000536218 IFRD1O00458 451 aaPredicted RBP13.22□□□□□ -0.29
LIG1-203ENST00000536218 KDM4BO94953 1096 aa13.22□□□□□ -0.29
LIG1-203ENST00000536218 HMGN1P05114 100 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms