RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	NCF1C	A8MVU1	366 aa	Predicted RBP	10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	PROM1	O43490	865 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	DYRK3	O43781	588 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	SPAG7	O75391	227 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	ATE1	O95260	518 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	EPPIN	O95925	133 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	C1QA	P02745	245 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	RFPL3S	P0C7P2	107 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	NCF1	P14598	390 aa	Predicted RBP	10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	KRT4	P19013	534 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	SERPINB3	P29508	390 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	SPR	P35270	261 aa	Predicted RBP	10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	TIMP3	P35625	211 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	GP5	P40197	560 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	SLC18A1	P54219	525 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	SLC12A2	P55011	1212 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	IRF8	Q02556	426 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	AP5B1	Q2VPB7	878 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	HHAT	Q5VTY9	493 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	POMZP3	Q6PJE2	187 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	SEM1	Q6ZVN7	128 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	C9orf40	Q8IXQ3	194 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	ZZZ3	Q8IYH5	903 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	ULK2	Q8IYT8	1036 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	TANK	Q92844	425 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	KISS1R	Q969F8	398 aa	Predicted RBP	10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	LRRC46	Q96FV0	321 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	TSPAN17	Q96FV3	270 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	FBXL20	Q96IG2	436 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	UBXN10	Q96LJ8	280 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	PAIP2	Q9BPZ3	127 aa	Known RBP	10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	CD244	Q9BZW8	370 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	LIME1	Q9H400	295 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	WWOX	Q9NZC7	414 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	CRIM1	Q9NZV1	1036 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	SPRR3	Q9UBC9	169 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	ZNF629	Q9UEG4	869 aa	Predicted RBP	10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	BOK	Q9UMX3	212 aa	Predicted RBP	10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	TSC22D4	Q9Y3Q8	395 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	PCDHB14	Q9Y5E9	798 aa		10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	10.61	□□□□□ -0.71
CTNND1-238	ENST00000534647	ACAN	P16112	2415 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	NAV3	Q8IVL0	2385 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	GMNC	A6NCL1	334 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	LRRC3C	A6NJW4	275 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647		A6NNC1	897 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	COPE	O14579	308 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	DVL2	O14641	736 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	FGF17	O60258	216 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	DIAPH2	O60879	1101 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	GOSR1	O95249	250 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	CCDC166	P0CW27	439 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	CD1D	P15813	335 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	CREB1	P16220	341 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	CPN2	P22792	545 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	DNASE1	P24855	282 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	GALNS	P34059	522 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	HSPA7	P48741	367 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	KCNJ2	P63252	427 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	RELB	Q01201	579 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	CHIT1	Q13231	466 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	MLC1	Q15049	377 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	SF3B4	Q15427	424 aa	Known RBP eCLIP	10.6	□□□□□ -0.71	2e-7	■■□□□ 11.7
CTNND1-238	ENST00000534647	SPRED3	Q2MJR0	410 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	FLYWCH1	Q4VC44	716 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	C10orf62	Q5T681	223 aa	Predicted RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	DEPDC1	Q5TB30	811 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	MROH9	Q5TGP6	573 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	KHDRBS2	Q5VWX1	349 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	OR4C11	Q6IEV9	310 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	LRRC70	Q7Z2Q7	622 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	WDR53	Q7Z5U6	358 aa	Predicted RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	ST13P4	Q8IZP2	240 aa	Predicted RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	RNASE6	Q93091	150 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	ESAM	Q96AP7	390 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	CMTM7	Q96FZ5	175 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	RMND5B	Q96G75	393 aa	Predicted RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	APOPT1	Q96IL0	206 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	DGAT2	Q96PD7	388 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	TM9SF2	Q99805	663 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	GPATCH1	Q9BRR8	931 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	PELO	Q9BRX2	385 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	NSRP1	Q9H0G5	558 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	EXO5	Q9H790	373 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	RPF2	Q9H7B2	306 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	ALKBH4	Q9NXW9	302 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	CNOT11	Q9UKZ1	510 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	RPH3A	Q9Y2J0	694 aa	Predicted RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	MTO1	Q9Y2Z2	717 aa	Known RBP	10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	ABCA4	P78363	2273 aa		10.6	□□□□□ -0.71
CTNND1-238	ENST00000534647	OR6C76	A6NM76	312 aa		10.59	□□□□□ -0.71
CTNND1-238	ENST00000534647	RNF223	E7ERA6	249 aa		10.59	□□□□□ -0.71
CTNND1-238	ENST00000534647	GOLGA8R	I6L899	631 aa		10.59	□□□□□ -0.71
CTNND1-238	ENST00000534647	RTCA	O00442	366 aa	Known RBP	10.59	□□□□□ -0.71
CTNND1-238	ENST00000534647	TM9SF1	O15321	606 aa		10.59	□□□□□ -0.71
CTNND1-238	ENST00000534647	TRIM3	O75382	744 aa	Predicted RBP	10.59	□□□□□ -0.71
CTNND1-238	ENST00000534647	TLX1	P31314	330 aa	Predicted RBP	10.59	□□□□□ -0.71
CTNND1-238	ENST00000534647	PIK3CB	P42338	1070 aa		10.59	□□□□□ -0.71
CTNND1-238	ENST00000534647	ASCL1	P50553	236 aa		10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms