RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 SKAP2O75563 359 aaPredicted RBP11.97□□□□□ -0.49
VPS28-216ENST00000533806 PSMG1O95456 288 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 IFI6P09912 130 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 SMU1Q2TAY7 513 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 GALNTL6Q49A17 601 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 ATP6AP1LQ52LC2 224 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 ZNF385BQ569K4 471 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 RTL4Q6ZR62 310 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 HDXQ7Z353 690 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 DND1Q8IYX4 353 aaKnown RBP11.97□□□□□ -0.49
VPS28-216ENST00000533806 CPSF7Q8N684 471 aaKnown RBP11.97□□□□□ -0.49
VPS28-216ENST00000533806 OR7G2Q8NG99 324 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 OR52R1Q8NGF1 315 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 RAB3IL1Q8TBN0 382 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 SLC22A8Q8TCC7 542 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 PAQR8Q8TEZ7 354 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 MTERF3Q96E29 417 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 SPACA9Q96E40 222 aaPredicted RBP11.97□□□□□ -0.49
VPS28-216ENST00000533806 AMDHD1Q96NU7 426 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 TSSK3Q96PN8 268 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 GAL3ST4Q96RP7 486 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 BRINP2Q9C0B6 783 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 NXF5Q9H1B4 397 aaKnown RBP11.97□□□□□ -0.49
VPS28-216ENST00000533806 GLIPR2Q9H4G4 154 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 REEP4Q9H6H4 257 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 PROK2Q9HC23 129 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 TIMMDC1Q9NPL8 285 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 MIEF1Q9NQG6 463 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 ASIC5Q9NY37 505 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 ERVK-11Q9UQG0 969 aa11.97□□□□□ -0.49
VPS28-216ENST00000533806 GPR55Q9Y2T6 319 aaPredicted RBP11.97□□□□□ -0.49
VPS28-216ENST00000533806 CHCHD2Q9Y6H1 151 aaPredicted RBP11.97□□□□□ -0.49
VPS28-216ENST00000533806 A0A087WV62 115 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 PINLYPA6NC86 204 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 KLRC4-KLRK1H3BQV0 150 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 KLF11O14901 512 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 TO15178 435 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 BCAS2O75934 225 aaPredicted RBP11.96□□□□□ -0.49
VPS28-216ENST00000533806 SASH3O75995 380 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 SLITRK5O94991 958 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 CCL3P10147 92 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 CNR1P21554 472 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 DRD5P21918 477 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 PPICP45877 212 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 ASMTP46597 345 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 NR0B1P51843 470 aaKnown RBP11.96□□□□□ -0.49
VPS28-216ENST00000533806 C21orf58P58505 322 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 OCRLQ01968 901 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 EMX2Q04743 252 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 FOXO1Q12778 655 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 NTRK2Q16620 822 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 EIF2S3LQ2VIR3 472 aaKnown RBP11.96□□□□□ -0.49
VPS28-216ENST00000533806 TMEM64Q6YI46 380 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 CHERPQ8IWX8 916 aaKnown RBP11.96□□□□□ -0.49
VPS28-216ENST00000533806 RIMKLAQ8IXN7 391 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 LRRC34Q8IZ02 419 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 FAM9CQ8IZT9 166 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 KIRREL3Q8IZU9 778 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 OR2L13Q8N349 312 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 POGLUT1Q8NBL1 392 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 CDC26Q8NHZ8 85 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 MGARPQ8TDB4 240 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 KAT2AQ92830 837 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 GFM2Q969S9 779 aaKnown RBP11.96□□□□□ -0.49
VPS28-216ENST00000533806 VSTM2LQ96N03 204 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 BTBD9Q96Q07 612 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 BBS4Q96RK4 519 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 PAIP2Q9BPZ3 127 aaKnown RBP11.96□□□□□ -0.49
VPS28-216ENST00000533806 ITPAQ9BY32 194 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 AKTIPQ9H8T0 292 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 GIMAP4Q9NUV9 329 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 PNPOQ9NVS9 261 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 THAP1Q9NVV9 213 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 ARGLU1Q9NWB6 273 aaPredicted RBP11.96□□□□□ -0.49
VPS28-216ENST00000533806 ATP6V1HQ9UI12 483 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 C19orf53Q9UNZ5 99 aaPredicted RBP11.96□□□□□ -0.49
VPS28-216ENST00000533806 ENTPD4Q9Y227 616 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 CFL2Q9Y281 166 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 NPFFR2Q9Y5X5 522 aa11.96□□□□□ -0.49
VPS28-216ENST00000533806 USP9YO00507 2555 aaPredicted RBP11.96□□□□□ -0.5
VPS28-216ENST00000533806 UTP20O75691 2785 aaKnown RBP11.95□□□□□ -0.5
VPS28-216ENST00000533806 A0A0G2JMM0 328 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 A0A1W2PPB8 328 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 A0A1W2PRS3 328 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 KIR3DP1A8MWS1 328 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 UPK1AO00322 258 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 AKAP10O43572 662 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 GLSO94925 669 aaPredicted RBP11.95□□□□□ -0.5
VPS28-216ENST00000533806 LRATO95237 230 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 PRPS2P11908 318 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 NAGAP17050 411 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 MAPK1P28482 360 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 MEOX1P50221 254 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 NCBP2P52298 156 aaKnown RBP eCLIP11.95□□□□□ -0.55e-6■■□□□ 11.5
VPS28-216ENST00000533806 PTGR1Q14914 329 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 PDCD2Q16342 344 aaPredicted RBP11.95□□□□□ -0.5
VPS28-216ENST00000533806 HYAL4Q2M3T9 481 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 C6orf163Q5TEZ5 329 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 IL23RQ5VWK5 629 aa11.95□□□□□ -0.5
VPS28-216ENST00000533806 SLC22A10Q63ZE4 541 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms