RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SGCZQ96LD1 299 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 PPP1R36Q96LQ0 422 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 AMDHD1Q96NU7 426 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 C1orf50Q9BV19 199 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 GLIPR2Q9H4G4 154 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 ANKRA2Q9H9E1 313 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 BCAP29Q9UHQ4 241 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 CFL2Q9Y281 166 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 DTX4Q9Y2E6 619 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 UBR5O95071 2799 aaPredicted RBP18.35■□□□□ 0.53
CPSF1-209ENST00000532725 TENM4Q6N022 2769 aa18.35■□□□□ 0.53
CPSF1-209ENST00000532725 BCAS2O75934 225 aaPredicted RBP18.34■□□□□ 0.53
CPSF1-209ENST00000532725 PRPS2P11908 318 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 GPX3P22352 226 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 NR0B1P51843 470 aaKnown RBP18.34■□□□□ 0.53
CPSF1-209ENST00000532725 NCBP2P52298 156 aaKnown RBP eCLIP18.34■□□□□ 0.53
CPSF1-209ENST00000532725 PMP22Q01453 160 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 KCNC4Q03721 635 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 SRSF11Q05519 484 aaKnown RBP18.34■□□□□ 0.53
CPSF1-209ENST00000532725 ZNF385BQ569K4 471 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 ANKRD26P1Q6NSI1 321 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 SULF2Q8IWU5 870 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 FAM9CQ8IZT9 166 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 OR7G2Q8NG99 324 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 MTERF3Q96E29 417 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 SLX1AQ9BQ83 275 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 NUF2Q9BZD4 464 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 MEAF6Q9HAF1 191 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 SH2D2AQ9NP31 389 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 TIMMDC1Q9NPL8 285 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 OLAHQ9NV23 265 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 ZNF446Q9NWS9 450 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 ATP6V1HQ9UI12 483 aa18.34■□□□□ 0.53
CPSF1-209ENST00000532725 RELNP78509 3460 aa18.33■□□□□ 0.53
CPSF1-209ENST00000532725 SVILO95425 2214 aa18.33■□□□□ 0.53
CPSF1-209ENST00000532725 PLOD2O00469 737 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 PEX1O43933 1283 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 WISP2O76076 250 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 CRYABP02511 175 aaKnown RBP18.33■□□□□ 0.52
CPSF1-209ENST00000532725 FBXO45P0C2W1 286 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 GNLYP22749 145 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 MST1P26927 711 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 MAD2L1Q13257 205 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-209ENST00000532725 PTGR1Q14914 329 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 HLA-DQA1Q5Y7H0 255 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 RTL4Q6ZR62 310 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 TAGAPQ8N103 731 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 GOLM1Q8NBJ4 401 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 PSD4Q8NDX1 1056 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 NR4A3Q92570 626 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 PPCDCQ96CD2 204 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 DEPPQ9NTK1 212 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 ASIC5Q9NY37 505 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 SH3BP4Q9P0V3 963 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 PRODH2Q9UF12 536 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 EIF3LQ9Y262 564 aaKnown RBP18.33■□□□□ 0.52
CPSF1-209ENST00000532725 KLF13Q9Y2Y9 288 aaPredicted RBP18.33■□□□□ 0.52
CPSF1-209ENST00000532725 POLEQ07864 2286 aa18.33■□□□□ 0.52
CPSF1-209ENST00000532725 ESPL1Q14674 2120 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 FLNCQ14315 2725 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 A0A087WV62 115 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 KLRC4-KLRK1H3BQV0 150 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 SLITRK5O94991 958 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 G6PDP11413 515 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 DRD5P21918 477 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 NTSP30990 170 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 FRKP42685 505 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-209ENST00000532725 PPICP45877 212 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 UQCRFS1P47985 274 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 TDGF1P3P51864 188 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 TMEM64Q6YI46 380 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 LARP4Q71RC2 724 aaKnown RBP eCLIP18.32■□□□□ 0.52
CPSF1-209ENST00000532725 R3HCC1LQ7Z5L2 792 aaKnown RBP18.32■□□□□ 0.52
CPSF1-209ENST00000532725 WDR75Q8IWA0 830 aaKnown RBP18.32■□□□□ 0.52
CPSF1-209ENST00000532725 RIMKLAQ8IXN7 391 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 LRRC34Q8IZ02 419 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 ST6GALNAC3Q8NDV1 305 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 NUDT8Q8WV74 236 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 CIDECQ96AQ7 238 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-209ENST00000532725 SPACA9Q96E40 222 aaPredicted RBP18.32■□□□□ 0.52
CPSF1-209ENST00000532725 ELP4Q96EB1 424 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 FRMD6Q96NE9 622 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 NXF5Q9H1B4 397 aaKnown RBP18.32■□□□□ 0.52
CPSF1-209ENST00000532725 NPFFR2Q9Y5X5 522 aa18.32■□□□□ 0.52
CPSF1-209ENST00000532725 SCAMP2O15127 329 aaKnown RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 HDAC3O15379 428 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 NME6O75414 186 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 EDN3P14138 238 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 CNR1P21554 472 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 DIO3P55073 304 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 DCAF7P61962 342 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 PPP2R2AP63151 447 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 MRPL49Q13405 166 aaKnown RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 RNFT1Q5M7Z0 435 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 ZNF551Q7Z340 670 aaPredicted RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 DND1Q8IYX4 353 aaKnown RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 CPSF7Q8N684 471 aaKnown RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 KRTCAP2Q8N6L1 136 aa18.31■□□□□ 0.52
CPSF1-209ENST00000532725 FAM98AQ8NCA5 519 aaKnown RBP18.31■□□□□ 0.52
CPSF1-209ENST00000532725 OR7A2PQ8NGA2 310 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms