RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ZNF517Q6ZMY9 492 aaPredicted RBP18.17■□□□□ 0.5
VPS28-213ENST00000530983 GRASPQ7Z6J2 395 aaPredicted RBP18.17■□□□□ 0.5
VPS28-213ENST00000530983 MRPL43Q8N983 215 aaKnown RBP18.17■□□□□ 0.5
VPS28-213ENST00000530983 MORN4Q8NDC4 146 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 OR7G1Q8NGA0 311 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 TMEM203Q969S6 136 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 AMDHD1Q96NU7 426 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 TIGARQ9NQ88 270 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 TAS2R7Q9NYW3 318 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 TRPC4Q9UBN4 977 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 CARD8Q9Y2G2 431 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 KLHL20Q9Y2M5 609 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 A0A1W2PQ09 198 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 OR1F1O43749 312 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 LCMT2O60294 686 aaKnown RBP18.17■□□□□ 0.5
VPS28-213ENST00000530983 CLEC2LP0C7M8 214 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 GAS1P54826 345 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 CDK5Q00535 292 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 UAP1L1Q3KQV9 507 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 GLYR1Q49A26 553 aaPredicted RBP18.17■□□□□ 0.5
VPS28-213ENST00000530983 TMEM52BQ4KMG9 183 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 ATAT1Q5SQI0 421 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 FAM181AQ8N9Y4 354 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 MIXL1Q9H2W2 232 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 DDX31Q9H8H2 851 aaKnown RBP18.17■□□□□ 0.5
VPS28-213ENST00000530983 ZCCHC3Q9NUD5 404 aaKnown RBP18.17■□□□□ 0.5
VPS28-213ENST00000530983 BOLA1Q9Y3E2 137 aa18.17■□□□□ 0.5
VPS28-213ENST00000530983 IL1AP01583 271 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 SLC6A11P48066 632 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 BNC1Q01954 994 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 FUT5Q11128 374 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 ELAVL3Q14576 367 aaKnown RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 NDUFA9Q16795 377 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 PPP2R2DQ66LE6 453 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 C22orf42Q6IC83 251 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 C1orf94Q6P1W5 598 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 CREB3L4Q8TEY5 395 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 DPH7Q9BTV6 452 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 PLA2G12AQ9BZM1 189 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 AICDAQ9GZX7 198 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 ABCB9Q9NP78 766 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 ZSCAN32Q9NX65 697 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 PLEKHB1Q9UF11 243 aaPredicted RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 ADAM29Q9UKF5 820 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 FBXW2Q9UKT8 454 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 TMA7Q9Y2S6 64 aaKnown RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 A0A0A6YYD5 115 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 EDDM13A0A1B0GTR0 161 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 A8MV72 311 aaPredicted RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 PRKRAO75569 313 aaKnown RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 LGI1O95970 557 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 CHRM4P08173 479 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 CHRM5P08912 532 aaPredicted RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 PPP2R1BP30154 601 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 PTGER1P34995 402 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 GPC1P35052 558 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 HNRNPA0Q13151 305 aaKnown RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 FAM209AQ5JX71 171 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 NDUFAF5Q5TEU4 345 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 KIAA1211LQ6NV74 962 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 SFTPA1Q8IWL2 248 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 ETFBKMTQ8IXQ9 262 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 LINC01555Q8NAE3 123 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 MSLNLQ96KJ4 702 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 LGR4Q9BXB1 951 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 NT5DC2Q9H857 520 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 CTPS2Q9NRF8 586 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 SLC9A8Q9Y2E8 581 aa18.16■□□□□ 0.5
VPS28-213ENST00000530983 YARS2Q9Y2Z4 477 aaKnown RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 SPIN1Q9Y657 262 aaPredicted RBP18.16■□□□□ 0.5
VPS28-213ENST00000530983 CHRNB1P11230 501 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 PRKCAP17252 672 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 MAN2A2P49641 1150 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 MRPS15P82914 257 aaKnown RBP18.15■□□□□ 0.5
VPS28-213ENST00000530983 CDK10Q15131 360 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 GPR19Q15760 415 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 ENTPD8Q5MY95 495 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 ZNF697Q5TEC3 545 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 OR2G6Q5TZ20 316 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 METRNLQ641Q3 311 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 OR4C11Q6IEV9 310 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 KIF18BQ86Y91 864 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 CLDN22Q8N7P3 220 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 TM9SF4Q92544 642 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 RSPRY1Q96DX4 576 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 ST6GAL2Q96JF0 529 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 C17orf62Q9BQA9 187 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 MCOLN1Q9GZU1 580 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 PCBD2Q9H0N5 130 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 RERGLQ9H628 205 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 LINC00854A0A1B0GVQ3 168 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 KIAA0355O15063 1070 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 LRRTM2O43300 516 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 APOL3O95236 402 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 RPN2P04844 631 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 HSD17B2P37059 387 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 WNT4P56705 351 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 TAB1Q15750 504 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 ZFP69Q49AA0 526 aa18.15■□□□□ 0.5
VPS28-213ENST00000530983 C3orf38Q5JPI3 329 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms