RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 LILRA5A6NI73 299 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 GPR89AB7ZAQ6 455 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 G3V3Y1 287 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 TFECO14948 347 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC28A2O43868 658 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PRKRAO75569 313 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 GPR89BP0CG08 455 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 LIPCP11150 499 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 CREB1P16220 341 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF37AP17032 561 aaPredicted RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 HSPA13P48723 471 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 POU3F4P49335 361 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 GNG10P50151 68 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 SLBPQ14493 270 aaKnown RBP eCLIP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 IGFBP7Q16270 282 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 AP5B1Q2VPB7 878 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ZCCHC23Q6ZST2 131 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 METTL4Q8N3J2 472 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF321PQ8N8H1 164 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 FAM47BQ8NA70 645 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ATG16L2Q8NAA4 619 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 OR2A1Q8NGT9 310 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 GRPEL2Q8TAA5 225 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PTERQ96BW5 349 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 MTERF3Q96E29 417 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF597Q96LX8 424 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 RANBP9Q96S59 729 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 RHOJQ9H4E5 214 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 SYNPO2LQ9H987 977 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 SLAMF7Q9NQ25 335 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PNO1Q9NRX1 252 aaKnown RBP7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 CUTCQ9NTM9 273 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 ALKBH4Q9NXW9 302 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 OR6C2Q9NZP2 312 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 C5AR2Q9P296 337 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 XPR1Q9UBH6 696 aa7.45□□□□□ -1.22
LIMCH1-219ENST00000514096 PTPRBP23467 1997 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 C17orf113A0A1B0GUU1 675 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 HYKKA2RU49 373 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 EVPLLA8MZ36 301 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ERI3O43414 337 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 PRKD3O94806 890 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 MT-ND3P03897 115 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 LCKP06239 509 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 CBLP22681 906 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 RRM2P31350 389 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 TMPRSS3P57727 454 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 BTN3A2P78410 334 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 CHIT1Q13231 466 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 NNATQ16517 81 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 NRF1Q16656 503 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 THOC6Q86W42 341 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 PARP8Q8N3A8 854 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 PTGR2Q8N8N7 351 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 C12orf43Q96C57 262 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 SCARF2Q96GP6 870 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ABHD17AQ96GS6 310 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 NSL1Q96IY1 281 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF578Q96N58 590 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 PFDN5Q99471 154 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 WDR77Q9BQA1 342 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 MRPS26Q9BYN8 205 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 CCDC90BQ9GZT6 254 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ING2Q9H160 280 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 NIT2Q9NQR4 276 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 INTS10Q9NVR2 710 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 HEY2Q9UBP5 337 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 CDC14AQ9UNH5 594 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 RUVBL1Q9Y265 456 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 FARSAQ9Y285 508 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ZNF175Q9Y473 711 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 KCNE2Q9Y6J6 123 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 MPDZO75970 2070 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 IGLV3-16A0A075B6K0 115 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ANKDD1BA6NHY2 528 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 TOR1AO14656 332 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 P2RX6O15547 441 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 C8orf89P0DMQ9 161 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 IL10P22301 178 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 CCKBRP32239 447 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 ALDH18A1P54886 795 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 RAB15P59190 212 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 RAB10P61026 200 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 LSM3P62310 102 aaKnown RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 GALEQ14376 348 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 TYSND1Q2T9J0 566 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 CDCP2Q5VXM1 449 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 WDR74Q6RFH5 385 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 UGT2A3Q6UWM9 527 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 C16orf47Q6ZP98 133 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 SYDE1Q6ZW31 735 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 DSELQ8IZU8 1212 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 OR8H3Q8N146 312 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 METTL25Q8N6Q8 603 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 WDR48Q8TAF3 677 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 CIDECQ96AQ7 238 aaPredicted RBP7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC47A1Q96FL8 570 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 HS6ST2Q96MM7 605 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 F2RL3Q96RI0 385 aa7.44□□□□□ -1.22
LIMCH1-219ENST00000514096 SLC29A1Q99808 456 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms