RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 FAM220BPB1ANY3 271 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 I3L1I5 382 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 FFAR2O15552 330 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PROM1O43490 865 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ICOSLGO75144 302 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 RECQL4O94761 1208 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 DDNO94850 711 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PRAMEF12O95522 483 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CD63P08962 238 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 SDC1P18827 310 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 XPAP23025 273 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ITGB8P26012 769 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 BMP8BP34820 402 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 KIR3DL1P43629 444 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CSNK1DP48730 415 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 STC1P52823 247 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ACLYP53396 1101 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ITGA1P56199 1179 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 E2F1Q01094 437 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 MC1RQ01726 317 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 GAB1Q13480 694 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 HTR4Q13639 388 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 C1DQ13901 141 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC25A35Q3KQZ1 300 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PLBD1Q6P4A8 553 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CASP12Q6UXS9 341 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CBLL1Q75N03 491 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 BMP8AQ7Z5Y6 402 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 JAZF1Q86VZ6 243 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 KLBQ86Z14 1044 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TOMM5Q8N4H5 51 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 OR13C5Q8NGS8 318 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 LKAAEAR1Q8TD35 194 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 STK35Q8TDR2 534 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TRIM43Q96BQ3 446 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CHFRQ96EP1 664 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 PCED1BQ96HM7 432 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CDCA4Q9BXL8 241 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 MAGIXQ9H6Y5 334 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 FOLH1BQ9HBA9 442 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 TEX10Q9NXF1 929 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 RCOR3Q9P2K3 495 aaPredicted RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 LSM2Q9Y333 95 aaKnown RBP6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 CCL27Q9Y4X3 112 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 ARID2Q68CP9 1835 aa6.88□□□□□ -1.31
LIMCH1-207ENST00000508466 SMIM28A0A1B0GU29 152 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 FAM183AA6NL82 134 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ARPC1BO15143 372 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 H2AFB2P0C5Z0 115 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 OPRD1P41143 372 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MAGEB1P43366 347 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 DAOAP59103 153 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 GRM1Q13255 1194 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 HLXQ14774 488 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ZNF124Q15973 351 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CRY2Q49AN0 593 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 GPR33Q49SQ1 333 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ACSM5Q6NUN0 579 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 RRM2BQ7LG56 351 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 LDLRAD3Q86YD5 345 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ZDHHC17Q8IUH5 632 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 SYT12Q8IV01 421 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PUSL1Q8N0Z8 303 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 C12orf45Q8N5I9 185 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NANOGP1Q8N7R0 232 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 OR10K1Q8NGX5 313 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CREB3L1Q96BA8 519 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MYEOVQ96EZ4 313 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NKX3-1Q99801 234 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 GAL3ST1Q99999 423 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CIPCQ9C0C6 399 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 RC3H2Q9HBD1 1191 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MRM3Q9HC36 420 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 SLC6A20Q9NP91 592 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 CRTAC1Q9NQ79 661 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NDUFB11Q9NX14 153 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 BABAM2Q9NXR7 383 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 TAS2R7Q9NYW3 318 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PTGFRNQ9P2B2 879 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 HECAQ9UBI9 543 aaPredicted RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 BTNL2Q9UIR0 455 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 RPS6KA6Q9UK32 745 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 POMT2Q9UKY4 750 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ERVW-1Q9UQF0 538 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ASF1AQ9Y294 204 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 TNRC6CQ9HCJ0 1690 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 KIAA1217Q5T5P2 1943 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 TRBV5-3A0A0A0MS03 114 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 LOC285095A0A1B0GVY8 99 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 ANKRD61A6NGH8 418 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 SH3BP5O60239 455 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 HCN1O60741 890 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 F9P00740 461 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 OR4Q2P0C623 313 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 SNRPBP14678 240 aaKnown RBP6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 NDUFB7P17568 137 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 TBXA2RP21731 343 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 MC4RP32245 332 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 RGRP47804 291 aa6.87□□□□□ -1.31
LIMCH1-207ENST00000508466 PIN1Q13526 163 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms