RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 GPBP1Q86WP2 473 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 CSNK1G2-AS1Q8NCQ2 148 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 FAM71CQ8NEG0 241 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 OR56B1Q8NGI3 324 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 DQX1Q8TE96 717 aaKnown RBP3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 FCGR1BQ92637 280 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 ATOH8Q96SQ7 321 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 SOSTQ9BQB4 213 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 GPR174Q9BXC1 333 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 UBXN6Q9BZV1 441 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 EGLN1Q9GZT9 426 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 ADNPQ9H2P0 1102 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 RNF41Q9H4P4 317 aaPredicted RBP3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 GNB4Q9HAV0 340 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 IKZF3Q9UKT9 509 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 MRPL11Q9Y3B7 192 aaKnown RBP3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 CLCA3PQ9Y6N3 262 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 SYNJ2O15056 1496 aa3.26□□□□□ -1.89
HMGB1P28-201ENST00000507778 NPIPA5A0A0B4J1W7 369 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 A0A1B0GTH9 108 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ACOD1A6NK06 481 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 SHISA9B4DS77 424 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 NPIPA5E9PKD4 350 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ADAM12O43184 909 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 STK17BO94768 372 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 NUDT14O95848 222 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 OAS1P00973 400 aaKnown RBP3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZCCHC18P0CG32 403 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 DNAJB1P25685 340 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 UCP1P25874 307 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 SHC1P29353 583 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 PRDX2P32119 198 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 CAMLGP49069 296 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 SGSHP51688 502 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 SPP2Q13103 211 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 PCK2Q16822 640 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZSWIM7Q19AV6 140 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 VWA2Q5GFL6 755 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZNF506Q5JVG8 444 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 TAF3Q5VWG9 929 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 APOOLQ6UXV4 268 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 GTSCR1Q86UQ5 136 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 SLC25A42Q86VD7 318 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZNF397Q8NF99 534 aaPredicted RBP3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 OR4Q3Q8NH05 313 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 NCLNQ969V3 563 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 BIRC7Q96CA5 298 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 NTNG2Q96CW9 530 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 CCDC51Q96ER9 411 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 RBM18Q96H35 190 aaKnown RBP3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ST6GALNAC5Q9BVH7 336 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ALG9Q9H6U8 611 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 NGBQ9NPG2 151 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 STARD5Q9NSY2 213 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 ACTR3BQ9P1U1 418 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 STYXL1Q9Y6J8 313 aa3.25□□□□□ -1.89
HMGB1P28-201ENST00000507778 A0A0J9YVX5 310 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 MCF2LO15068 1137 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 B3GALNT1O75752 331 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 PTBP3O95758 552 aaKnown RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ECDO95905 644 aaPredicted RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 GOT2P00505 430 aaKnown RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 HOXD4P09016 255 aaPredicted RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 CHRNA3P32297 505 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 SAA4P35542 130 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 VCPP55072 806 aaKnown RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 RAG2P55895 527 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 NOP14P78316 857 aaKnown RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 BNIP1Q12981 228 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZKSCAN8Q15776 578 aaPredicted RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 PARP6Q2NL67 630 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZNF699Q32M78 642 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ACSF3Q4G176 576 aaPredicted RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 LDLRAP1Q5SW96 308 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 RFWD3Q6PCD5 774 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZCCHC12Q6PEW1 402 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ATRAIDQ6UW56 229 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ADCK1Q86TW2 530 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 VPS36Q86VN1 386 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ARL14Q8N4G2 192 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZNF491Q8N8L2 437 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 MINDY2Q8NBR6 621 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 WDR36Q8NI36 951 aaKnown RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 TOMM40LQ969M1 308 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 TSPAN18Q96SJ8 248 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 PNNQ9H307 717 aaKnown RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ROPN1Q9HAT0 212 aaPredicted RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ABCC13Q9NSE7 274 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 ZNF490Q9ULM2 529 aaPredicted RBP3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 FKBP7Q9Y680 259 aa3.24□□□□□ -1.89
HMGB1P28-201ENST00000507778 FOXI3A8MTJ6 420 aaPredicted RBP3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 C19orf81C9J6K1 198 aa3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 LGALS8O00214 317 aa3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 RANBP6O60518 1105 aaKnown RBP3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 SH3BGRLO75368 114 aa3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 PDE5AO76074 875 aa3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 RENP00797 406 aa3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 CYP11B1P15538 503 aa3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 CAPN2P17655 700 aa3.23□□□□□ -1.89
HMGB1P28-201ENST00000507778 FUT1P19526 365 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms