RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 FCGR1AP12314 374 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 CD1DP15813 335 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 PCSK6P29122 969 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 TUBA1BP68363 451 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 REEP5Q00765 189 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 HYAL2Q12891 473 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 MRPL49Q13405 166 aaKnown RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF460Q14592 562 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 USP10Q14694 798 aaKnown RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 OXA1LQ15070 435 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 BTBD16Q32M84 506 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 DEFB134Q4QY38 66 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 INTS11Q5TA45 600 aaKnown RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 MFSD4BQ5TF39 518 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF324BQ6AW86 544 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 SULT1C3Q6IMI6 304 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 SLC2A7Q6PXP3 512 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 TMIGD1Q6UXZ0 262 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 TUBA1AQ71U36 451 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 LGI4Q8N135 537 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 KRT78Q8N1N4 520 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 CPSF7Q8N684 471 aaKnown RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 SIRT6Q8N6T7 355 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 BCORP1Q8N888 145 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 SNX31Q8N9S9 440 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 ANKRD53Q8N9V6 530 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 OR5T3Q8NGG3 340 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 SUN3Q8TAQ9 357 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF417Q8TAU3 575 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 ZCCHC10Q8TBK6 192 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 STAG3L4Q8TBR4 150 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 CREB3L4Q8TEY5 395 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 CHAC2Q8WUX2 184 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 TRIM63Q969Q1 353 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 KIAA1191Q96A73 305 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 WDR34Q96EX3 536 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 PEX11GQ96HA9 241 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 TSNARE1Q96NA8 513 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF587Q96SQ5 575 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 LPAR4Q99677 370 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 NPLQ9BXD5 320 aaPredicted RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 EFCAB1Q9HAE3 211 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 PLA2G3Q9NZ20 509 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 SLC5A6Q9Y289 635 aa7.51□□□□□ -1.21
SCN1A-207ENST00000507401 SPTAN1Q13813 2472 aaKnown RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 SPTBN1Q01082 2364 aaKnown RBP7.51□□□□□ -1.21
SCN1A-207ENST00000507401 CPAMD8Q8IZJ3 1885 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 IGHV3-20A0A0C4DH32 117 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 LRIT2A6NDA9 550 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 SYNDIG1LA6NDD5 238 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 OR5H15A6NDH6 313 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 NPEPPSL1A6NEC2 478 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 OR2W5A6NFC9 320 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 TRIM49D1C9J1S8 452 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 PSMD12O00232 456 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 TAPBPO15533 448 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 PRMT3O60678 531 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 PRAMEF2O60811 474 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 DEAF1O75398 565 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CLEC3AO75596 197 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 STK16O75716 305 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 SEC24DO94855 1032 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 WDR47O94967 919 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 OXSR1O95747 527 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CRYABP02511 175 aaKnown RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 SERPIND1P05546 499 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CELA2AP08217 269 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF888P0CJ79 500 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 RNH1P13489 461 aaKnown RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 NID1P14543 1247 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF26P17031 533 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 JUNBP17275 347 aaPredicted RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 HOXB6P17509 224 aaKnown RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CCNA2P20248 432 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 MYF6P23409 242 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 SLC7A1P30825 629 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 CASP2P42575 452 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 GDF5P43026 501 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 SERPINB10P48595 397 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ENTPD1P49961 510 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 NME5P56597 212 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 OR4D2P58180 307 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 RAB10P61026 200 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 STXBP1P61764 594 aaKnown RBP7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ZNF33BQ06732 778 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 PCDH1Q08174 1060 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 LAPTM5Q13571 262 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 E2F2Q14209 437 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ABRAXAS2Q15018 415 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 OCLNQ16625 522 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 MEP1AQ16819 746 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ADPRMQ3LIE5 342 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 PIGGQ5H8A4 983 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ACER2Q5QJU3 275 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 FAM180AQ6UWF9 173 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 QSOX2Q6ZRP7 698 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 LANCL3Q6ZV70 420 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 TMPRSS11BQ86T26 416 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 ISCA2Q86U28 154 aa7.5□□□□□ -1.21
SCN1A-207ENST00000507401 GPSM1Q86YR5 675 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms