RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CAPNS2Q96L46 248 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 ACAT2Q9BWD1 397 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 RNF41Q9H4P4 317 aaPredicted RBP2.63□□□□□ -1.99
VPS50-219ENST00000495039 Q9HAA7 133 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 CUTCQ9NTM9 273 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 TUBGCP4Q9UGJ1 667 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 CIDEBQ9UHD4 219 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 ATG4BQ9Y4P1 393 aa2.63□□□□□ -1.99
VPS50-219ENST00000495039 POGZQ7Z3K3 1410 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 MACROD2A1Z1Q3 448 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 CCDC69A6NI79 296 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 ZNF487B1APH4 448 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 DDX39AO00148 427 aaKnown RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 TLR4O00206 839 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 E2F3O00716 465 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 SH2D1BO14796 132 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 LRRTM2O43300 516 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 NME2P1O60361 137 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 VENTXO95231 258 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 APRTP07741 180 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 MARCKSP29966 332 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 CNN1P51911 297 aaKnown RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 NDST1P52848 882 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 UBXN1Q04323 297 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 CBX3Q13185 183 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 KLF5Q13887 457 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 LASP1Q14847 261 aaKnown RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 HAGHQ16775 308 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 SHROOM1Q2M3G4 852 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 TTC31Q49AM3 519 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 TCHHL1Q5QJ38 904 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 WDR25Q64LD2 544 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 ARL14Q8N4G2 192 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 OR6T1Q8NGN1 323 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 NTNG2Q96CW9 530 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 JPH2Q9BR39 696 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 TEX13AQ9BXU3 409 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 KCNMB3Q9NPA1 279 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 CYP39A1Q9NYL5 469 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 NDUFA13Q9P0J0 144 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 DHRS4-AS1Q9P1J3 65 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 RCOR3Q9P2K3 495 aaPredicted RBP2.62□□□□□ -1.99
VPS50-219ENST00000495039 COPS7AQ9UBW8 275 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 ENTPD4Q9Y227 616 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 SLC9A8Q9Y2E8 581 aa2.62□□□□□ -1.99
VPS50-219ENST00000495039 DHX29Q7Z478 1369 aaKnown RBP2.61□□□□□ -1.99
VPS50-219ENST00000495039 FER1L5A0AVI2 2057 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 TRAV9-2A0A087WT02 112 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 IGKV6-21A0A0C4DH24 114 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 TRBV2A0A0J9YWF9 115 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 SYCE3A1L190 88 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 VEGFDO43915 354 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 SRPX2O60687 465 aaPredicted RBP2.61□□□□□ -1.99
VPS50-219ENST00000495039 KBTBD11O94819 623 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 NUDT14O95848 222 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 OLFM2O95897 454 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 GOT2P00505 430 aaKnown RBP2.61□□□□□ -1.99
VPS50-219ENST00000495039 PIGRP01833 764 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 GSTA1P08263 222 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 TNFRSF4P43489 277 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 PITPNBP48739 271 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 HMGCS2P54868 508 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 CARTPTQ16568 116 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 C17orf58Q2M2W7 97 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 HKDC1Q2TB90 917 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 C14orf28Q4W4Y0 310 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 PRAMEF7Q5VXH5 474 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 ETFRF1Q6IPR1 90 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 APOOLQ6UXV4 268 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 MOB2Q70IA6 237 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 LUZP1Q86V48 1076 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 PEX5LQ8IYB4 626 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 ZNF491Q8N8L2 437 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 LEMD2Q8NC56 503 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 FLVCR1-AS1Q8TAF5 88 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 TBCKQ8TEA7 893 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 ZBED6CLQ96FA7 236 aaPredicted RBP2.61□□□□□ -1.99
VPS50-219ENST00000495039 C19orf43Q9BQ61 176 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 DDX47Q9H0S4 455 aaKnown RBP2.61□□□□□ -1.99
VPS50-219ENST00000495039 AMBNQ9NP70 447 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 MYOZ2Q9NPC6 264 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 HPS4Q9NQG7 708 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 PRMT8Q9NR22 394 aaPredicted RBP2.61□□□□□ -1.99
VPS50-219ENST00000495039 ARMCX1Q9P291 453 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 FAM153AQ9UHL3 310 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 TRMT6Q9UJA5 497 aaKnown RBP2.61□□□□□ -1.99
VPS50-219ENST00000495039 RNF24Q9Y225 148 aa2.61□□□□□ -1.99
VPS50-219ENST00000495039 RAD54L2Q9Y4B4 1467 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 A0A0A6YYD4 124 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 TRIM64A6NGJ6 449 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 TRIM64BA6NI03 449 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 EI24O14681 340 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 ARPC1BO15143 372 aaKnown RBP2.6□□□□□ -1.99
VPS50-219ENST00000495039 CFLARO15519 480 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 CXCL14O95715 111 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 ABHD2P08910 425 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 SNRPCP09234 159 aaKnown RBP2.6□□□□□ -1.99
VPS50-219ENST00000495039 UCP1P25874 307 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 CHRNA3P32297 505 aa2.6□□□□□ -1.99
VPS50-219ENST00000495039 HMGCLP35914 325 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms