RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 TGM3Q08188 693 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 AMZ1Q400G9 498 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 USP53Q70EK8 1073 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 TMCO5AQ8N6Q1 288 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 ZCCHC10Q8TBK6 192 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 MAP3K3Q99759 626 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 NEUROD4Q9HD90 331 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 LYARQ9NX58 379 aaKnown RBP11.45□□□□□ -0.58
HDAC6-230ENST00000488543 CHCHD3Q9NX63 227 aaKnown RBP11.45□□□□□ -0.58
HDAC6-230ENST00000488543 RPS6KA6Q9UK32 745 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 MRPS2Q9Y399 296 aaKnown RBP11.45□□□□□ -0.58
HDAC6-230ENST00000488543 ZNF451Q9Y4E5 1061 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 SNX8Q9Y5X2 465 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 CSNK1G3Q9Y6M4 447 aa11.45□□□□□ -0.58
HDAC6-230ENST00000488543 A0A1W2PS29 197 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 ZSCAN9O15535 394 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 DNAJB6O75190 326 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 GUCY1B2O75343 617 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 ARAFP10398 606 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 VBP1P61758 197 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 RBBP4Q09028 425 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 MOGQ16653 247 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 ZNF750Q32MQ0 723 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 RBM48Q5RL73 367 aaKnown RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 TTC23Q5W5X9 447 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 ARMC6Q6NXE6 501 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 SLC48A1Q6P1K1 146 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 Q6ZPB1 254 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 ZDHHC21Q8IVQ6 265 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 ARL10Q8N8L6 244 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 NFKBIDQ8NI38 313 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 SUN3Q8TAQ9 357 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 CNRIP1Q96F85 164 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 HSH2DQ96JZ2 352 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 COX4I2Q96KJ9 171 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 NODALQ96S42 347 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 RBM4BQ9BQ04 359 aaKnown RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 RBM4Q9BWF3 364 aaKnown RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 YTHDF1Q9BYJ9 559 aaKnown RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 SERHL2Q9H4I8 314 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 RASSF1Q9NS23 344 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 KCMF1Q9P0J7 381 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 FUOMA2VDF0 154 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 SLC9B1P1A6NJY1 282 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 C9P02748 559 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 HOXB6P17509 224 aaKnown RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 PCMT1P22061 227 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 FUT4P22083 530 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 AQP1P29972 269 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 RPS26P62854 115 aaKnown RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 CFHR1Q03591 330 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 EMX1Q04741 257 aaPredicted RBP11.44□□□□□ -0.58
HDAC6-230ENST00000488543 CDK5R2Q13319 367 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 SCARB2Q14108 478 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 DEFB110Q30KQ9 67 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 ZNF691Q5VV52 312 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 FKBP9P1Q75LS8 142 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 CCDC80Q76M96 950 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 B3GNT8Q7Z7M8 397 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 SHISA5Q8N114 240 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 HORMAD2Q8N7B1 307 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 CAMKVQ8NCB2 501 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 RAB2BQ8WUD1 216 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 MUL1Q969V5 352 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 C10orf90Q96M02 699 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 TGM7Q96PF1 710 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 TUBA1CQ9BQE3 449 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 SEMA6CQ9H3T2 930 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 UCK1Q9HA47 277 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 STARD5Q9NSY2 213 aa11.44□□□□□ -0.58
HDAC6-230ENST00000488543 ARHGAP33O14559 1287 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 SIGLEC6O43699 453 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 FADS2O95864 444 aaKnown RBP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 HPRP00739 348 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 EIF2S1P05198 315 aaKnown RBP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 CDH3P22223 829 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 IGFBP5P24593 272 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 CAPZBP47756 277 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 CLK3P49761 638 aaKnown RBP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 DAPP51397 102 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 RUNX2Q13950 521 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 CTF1Q16619 201 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 IQCCQ4KMZ1 466 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 SLC23A3Q6PIS1 610 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 PRR23CQ6ZRP0 262 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 C6orf120Q7Z4R8 191 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 EID2Q8N6I1 236 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 OR5K1Q8NHB7 308 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 FAR1Q8WVX9 515 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 LZICQ8WZA0 190 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 RPL3LQ92901 407 aaKnown RBP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 ZNF681Q96N22 645 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 SERINC2Q96SA4 455 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.43□□□□□ -0.58
HDAC6-230ENST00000488543 IL1RAPQ9NPH3 570 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 TMEM9Q9P0T7 183 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 SLC6A14Q9UN76 642 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 SNX5Q9Y5X3 404 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 ZNF318Q5VUA4 2279 aa11.43□□□□□ -0.58
HDAC6-230ENST00000488543 LILRA5A6NI73 299 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms