RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 FAIM2Q9BWQ8 316 aa14.44□□□□□ -0.1
CCDC88B-205ENST00000472524 SLC6A15Q9H2J7 730 aa14.44□□□□□ -0.1
CCDC88B-205ENST00000472524 PFDN4Q9NQP4 134 aa14.44□□□□□ -0.1
CCDC88B-205ENST00000472524 SPRR3Q9UBC9 169 aa14.44□□□□□ -0.1
CCDC88B-205ENST00000472524 FETUBQ9UGM5 382 aa14.44□□□□□ -0.1
CCDC88B-205ENST00000472524 ACAD8Q9UKU7 415 aa14.44□□□□□ -0.1
CCDC88B-205ENST00000472524 DTX4Q9Y2E6 619 aa14.44□□□□□ -0.1
CCDC88B-205ENST00000472524 NPFFR2Q9Y5X5 522 aa14.44□□□□□ -0.1
CCDC88B-205ENST00000472524 A0A1W2PPM1 405 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 NKX2-6A6NCS4 301 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 PCDH7O60245 1069 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 SUSD5O60279 629 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 HCN1O60741 890 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 ULK1O75385 1050 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 KRT15P19012 456 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 CSNK2A2P19784 350 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 ENDOUP21128 410 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 GPX3P22352 226 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 ACVR2AP27037 513 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 CHRNB4P30926 498 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 TRPC1P48995 793 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 TMED10P49755 219 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 HMGCS1Q01581 520 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 DUSP2Q05923 314 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 LCP2Q13094 533 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 LTB4RQ15722 352 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 WLSQ5T9L3 541 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 SCIMPQ6UWF3 145 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 CCNYL1Q8N7R7 359 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 OR10Q1Q8NGQ4 319 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 UBLCP1Q8WVY7 318 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 SARAFQ96BY9 339 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 L3HYPDHQ96EM0 354 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 KCNA7Q96RP8 456 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 TREX2Q9BQ50 279 aaPredicted RBP14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 ACPTQ9BZG2 426 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 UCK2Q9BZX2 261 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 NXF5Q9H1B4 397 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 MCCC2Q9HCC0 563 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 RYDENQ9NUL5 291 aaKnown RBP14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 ALKBH4Q9NXW9 302 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 MAT2BQ9NZL9 334 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 HEY2Q9UBP5 337 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 MCM8Q9UJA3 840 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 PSME2Q9UL46 239 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 EMCNQ9ULC0 261 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 STK38LQ9Y2H1 464 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 TIMM22Q9Y584 194 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 ZNF780BQ9Y6R6 833 aa14.43□□□□□ -0.1
CCDC88B-205ENST00000472524 GNG14A0A1W2PPG7 69 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 SMIM23A6NLE4 172 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 GLRA3O75311 464 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 SHBGP04278 402 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 ATP1B1P05026 303 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 IL3P08700 152 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 MYL2P10916 166 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 CAPN3P20807 821 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 S1PR1P21453 382 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 GDF1P27539 372 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 ABCD3P28288 659 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 SLCO1A2P46721 670 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 PKNOX1P55347 436 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 TRA2BP62995 288 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 RAE1P78406 368 aaKnown RBP14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 BTKQ06187 659 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 MGAT2Q10469 447 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 MAP4K2Q12851 820 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 DUSP8Q13202 625 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 TBCELQ5QJ74 424 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 TMEM198Q66K66 360 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 B3GNT6Q6ZMB0 384 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 ACAD11Q709F0 780 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 LRRC25Q8N386 305 aaPredicted RBP14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 LIX1Q8N485 282 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 SIMC1Q8NDZ2 872 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 SPPL2AQ8TCT8 520 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 CNRIP1Q96F85 164 aaPredicted RBP14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 APIPQ96GX9 242 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 RILPQ96NA2 401 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 EBPLQ9BY08 206 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 ITPAQ9BY32 194 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 GSTO2Q9H4Y5 243 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 B4GALT7Q9UBV7 327 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 DCDC2Q9UHG0 476 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 UTS2RQ9UKP6 389 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 DLGAP4Q9Y2H0 992 aa14.42□□□□□ -0.1
CCDC88B-205ENST00000472524 DOCK7Q96N67 2140 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 TRIM3O75382 744 aaPredicted RBP14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 CBX7O95931 251 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 ENO1P06733 434 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 PCSK2P16519 638 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 MASP1P48740 699 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 RPP38P78345 283 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 MRPS35P82673 323 aaKnown RBP14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 ACSM2AQ08AH3 577 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 SPIN4Q56A73 249 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 C1orf185Q5T7R7 199 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 ACSM2BQ68CK6 577 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 RTL6Q6ICC9 239 aa14.41□□□□□ -0.1
CCDC88B-205ENST00000472524 ZYG11AQ6WRX3 759 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms