RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ZNF225Q9UK10 706 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 CFL2Q9Y281 166 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 EXOC1LA0A1B0GW35 172 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 OR4F21O95013 312 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 ATP1B1P05026 303 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 ABHD2P08910 425 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 CSNK2A2P19784 350 aaPredicted RBP15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 ABCD3P28288 659 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 DEKP35659 375 aaKnown RBP15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 HSD17B3P37058 310 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 CASP3P42574 277 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 MASP1P48740 699 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 TRA2BP62995 288 aaKnown RBP15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 CLCQ05315 142 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 MGAT2Q10469 447 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 MAP4K2Q12851 820 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 DUSP8Q13202 625 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 TEX35Q5T0J7 233 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 CES4AQ5XG92 561 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 TIFABQ6ZNK6 161 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 PACS2Q86VP3 889 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 PRR22Q8IZ63 422 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 MMP21Q8N119 569 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 NTNG2Q96CW9 530 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 BRINP2Q9C0B6 783 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 NXF5Q9H1B4 397 aaKnown RBP15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 UBQLN3Q9H347 655 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 MAT2BQ9NZL9 334 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 ZNF639Q9UID6 485 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 PSME2Q9UL46 239 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 DTX4Q9Y2E6 619 aa15.18■□□□□ 0.02
CCDC28B-204ENST00000469003 C15orf38-AP3S2A0A0A6YYH1 394 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 HSPB2A8KAH6 182 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 AHRRA9YTQ3 701 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 CDH16O75309 829 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 ERAL1O75616 437 aaKnown RBP15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 TRAPPC6AO75865 159 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 HPNP05981 417 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 HSD3B1P14060 373 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 NAGAP17050 411 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 KRT15P19012 456 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 TAC1P20366 129 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 HSD3B2P26439 372 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 FEN1P39748 380 aaKnown RBP15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 CDK9P50750 372 aaKnown RBP15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 CRYZQ08257 329 aaKnown RBP15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 RASA2Q15283 850 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 TESK1Q15569 626 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 HSPB2Q16082 182 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 FNDC7Q5VTL7 733 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 TMEM81Q6P7N7 255 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 FAM111BQ6SJ93 734 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 SEM1Q6ZVN7 128 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 C1orf52Q8N6N3 182 aaKnown RBP15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 KLHL29Q96CT2 875 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 MTBPQ96DY7 904 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 TMEM41AQ96HV5 264 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 FAIM2Q9BWQ8 316 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 VPS29Q9UBQ0 182 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 BCAP29Q9UHQ4 241 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 C15orf41Q9Y2V0 281 aa15.17■□□□□ 0.02
CCDC28B-204ENST00000469003 MANBAO00462 879 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 PPM1BO75688 479 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 SUPT7LO94864 414 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 EPPINO95925 133 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 KRT6AP02538 564 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 KRT6BP04259 564 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 ABCB1P08183 1280 aaPredicted RBP15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 GCAP28676 217 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 KRT6CP48668 564 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 DLX5P56178 289 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 CSTF3Q12996 717 aaKnown RBP15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 MYBPHQ13203 477 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 EXOSC7Q15024 291 aaKnown RBP15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 ACSF3Q4G176 576 aaPredicted RBP15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 UNC50Q53HI1 259 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 ZNF678Q5SXM1 525 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 WDR53Q7Z5U6 358 aaPredicted RBP15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 LCA5Q86VQ0 697 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 PM20D2Q8IYS1 436 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 CDYL2Q8N8U2 506 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 CTHRC1Q96CG8 243 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 HSPBAP1Q96EW2 488 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 LCORQ96JN0 433 aaPredicted RBP15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 ZNF681Q96N22 645 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 GNRHR2Q96P88 292 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 ZNF382Q96SR6 550 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 HBEGFQ99075 208 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 TIMP4Q99727 224 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 ITPAQ9BY32 194 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 TMEM216Q9P0N5 145 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 L3MBTL1Q9Y468 752 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 ZNF780BQ9Y6R6 833 aa15.16■□□□□ 0.02
CCDC28B-204ENST00000469003 ACOX3O15254 700 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 DLX3O60479 287 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 CBX7O95931 251 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 CEACAM8P31997 349 aaPredicted RBP15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 SOX18P35713 384 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 ALDH9A1P49189 494 aa15.15■□□□□ 0.02
CCDC28B-204ENST00000469003 DCAF7P61962 342 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms