RNA–Protein interactions for RNA: ENST00000454542.5

HDAC4-205, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-205ENST00000454542 CFL2Q9Y281 166 aa13.09□□□□□ -0.31
HDAC4-205ENST00000454542 KLF13Q9Y2Y9 288 aaPredicted RBP13.09□□□□□ -0.31
HDAC4-205ENST00000454542 A0A087WV62 115 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 PLOD2O00469 737 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 SCAMP2O15127 329 aaKnown RBP13.08□□□□□ -0.32
HDAC4-205ENST00000454542 PEX11AO75192 247 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 VPS4BO75351 444 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 CBX6O95503 412 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 CRYABP02511 175 aaKnown RBP13.08□□□□□ -0.32
HDAC4-205ENST00000454542 PRPS2P11908 318 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 NTSP30990 170 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 EXOSC7Q15024 291 aaKnown RBP13.08□□□□□ -0.32
HDAC4-205ENST00000454542 NTRK2Q16620 822 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 TRMT12Q53H54 448 aaKnown RBP13.08□□□□□ -0.32
HDAC4-205ENST00000454542 ATG16L1Q676U5 607 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 RTL4Q6ZR62 310 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 SIAH3Q8IW03 269 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 LIX1Q8N485 282 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 FNDC5Q8NAU1 212 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 OR7G2Q8NG99 324 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 OR52R1Q8NGF1 315 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 CLHC1Q8NHS4 586 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 TMEM125Q96AQ2 219 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 TUBGCP3Q96CW5 907 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 VSTM2LQ96N03 204 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 AMDHD1Q96NU7 426 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 BTBD9Q96Q07 612 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 C1orf50Q9BV19 199 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 ITPAQ9BY32 194 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 TIMMDC1Q9NPL8 285 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 KLHL1Q9NR64 748 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 DEPPQ9NTK1 212 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 PNPOQ9NVS9 261 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 ATP6V1HQ9UI12 483 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 VPS4AQ9UN37 437 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 CROCCQ5TZA2 2017 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 MYO18BQ8IUG5 2567 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 BAHCC1Q9P281 2608 aa13.08□□□□□ -0.32
HDAC4-205ENST00000454542 PRRC2CQ9Y520 2896 aaKnown RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 C2orf92A0A1B0GVN3 265 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 TO15178 435 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 PDPK1O15530 556 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 BCAS2O75934 225 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 GNLYP22749 145 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 MST1P26927 711 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 MPIP34949 423 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 NCBP2P52298 156 aaKnown RBP eCLIP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 EMX2Q04743 252 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 MAD2L1Q13257 205 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 PTGR1Q14914 329 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 OGFOD2Q6N063 350 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 IL20RBQ6UXL0 311 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 CAMKMTQ7Z624 323 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 RIMKLAQ8IXN7 391 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 TAGAPQ8N103 731 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 OR2L13Q8N349 312 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 ZFP62Q8NB50 900 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 POGLUT1Q8NBL1 392 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 FAM98AQ8NCA5 519 aaKnown RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 PAQR8Q8TEZ7 354 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 GFM2Q969S9 779 aaKnown RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 NTNG2Q96CW9 530 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 BBS4Q96RK4 519 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 NXF5Q9H1B4 397 aaKnown RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 MANSC1Q9H8J5 431 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 AKTIPQ9H8T0 292 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 ACSS1Q9NUB1 689 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 PRODH2Q9UF12 536 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 BAIAP2L1Q9UHR4 511 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 ERVK-11Q9UQG0 969 aa13.07□□□□□ -0.32
HDAC4-205ENST00000454542 CHCHD2Q9Y6H1 151 aaPredicted RBP13.07□□□□□ -0.32
HDAC4-205ENST00000454542 A0A0G2JMM0 328 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 A0A1W2PPB8 328 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 A0A1W2PRS3 328 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 FRG2CA6NGY1 282 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 KIR3DP1A8MWS1 328 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 SDHDO14521 159 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 ACOX3O15254 700 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 COQ9O75208 318 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 LRATO95237 230 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 CCL3P10147 92 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 HPCAL1P37235 193 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 RPL3P39023 403 aaKnown RBP13.06□□□□□ -0.32
HDAC4-205ENST00000454542 MC3RP41968 323 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 MEOX1P50221 254 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 NR0B1P51843 470 aaKnown RBP13.06□□□□□ -0.32
HDAC4-205ENST00000454542 DCAF7P61962 342 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 MRPL49Q13405 166 aaKnown RBP13.06□□□□□ -0.32
HDAC4-205ENST00000454542 MLC1Q15049 377 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 RPS6KA2Q15349 733 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 MAPKAPK3Q16644 382 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 IL23RQ5VWK5 629 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 ANKRD26P1Q6NSI1 321 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 NPSR1Q6W5P4 371 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 LARP4Q71RC2 724 aaKnown RBP eCLIP13.06□□□□□ -0.32
HDAC4-205ENST00000454542 R3HCC1LQ7Z5L2 792 aaKnown RBP13.06□□□□□ -0.32
HDAC4-205ENST00000454542 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.06□□□□□ -0.32
HDAC4-205ENST00000454542 SULF2Q8IWU5 870 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 FBXW8Q8N3Y1 598 aa13.06□□□□□ -0.32
HDAC4-205ENST00000454542 CPSF7Q8N684 471 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms