RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LRRC4Q9HBW1 653 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 UBE2TQ9NPD8 197 aaPredicted RBP3.73□□□□□ -1.81
VPS29-202ENST00000447578 CHST11Q9NPF2 352 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PXMP2Q9NR77 195 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 TBK1Q9UHD2 729 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 FAM153AQ9UHL3 310 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 EXOC7Q9UPT5 735 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 NCKAP1Q9Y2A7 1128 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 PLEKHA6Q9Y2H5 1048 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 ZHX2Q9Y6X8 837 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 COL4A5P29400 1685 aa3.73□□□□□ -1.81
VPS29-202ENST00000447578 IGSF9BQ9UPX0 1349 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ARFGEF1Q9Y6D6 1849 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 MYH4Q9Y623 1939 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 A0A1W2PPI3 338 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ASPDHA6ND91 283 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 KPNA7A9QM74 516 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ANKRD63C9JTQ0 380 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 E5RGE8 158 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CTSVO60911 334 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 GRAP2O75791 330 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 LYPLA2O95372 231 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CCNE2O96020 404 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 DGKAP23743 735 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CCND2P30279 289 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 DUTP33316 252 aaKnown RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 HSPA9P38646 679 aaKnown RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 FUT6P51993 359 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 MAZP56270 477 aaKnown RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 SNRPFP62306 86 aaKnown RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 GNGT1P63211 74 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 GTF2BQ00403 316 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 PRKCEQ02156 737 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SP4Q02446 784 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 MAP2K1Q02750 393 aaPredicted RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 LGALS3BPQ08380 585 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ZBTB17Q13105 803 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 DMP1Q13316 513 aaPredicted RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 CDH18Q13634 790 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 DPYSQ14117 519 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 GK2Q14410 553 aaPredicted RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 RBM39Q14498 530 aaKnown RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 MESDQ14696 234 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 KIR2DS3Q14952 304 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 OPCMLQ14982 345 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CEBPEQ15744 281 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CARTPTQ16568 116 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 KCTD19Q17RG1 926 aaPredicted RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 KRT71Q3SY84 523 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 EPC2Q52LR7 807 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 TTMPQ5BVD1 217 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ARMCX4Q5H9R4 360 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SLC35D3Q5M8T2 416 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CEP85LQ5SZL2 805 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 C1orf220Q5T0J3 134 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 KCTD16Q68DU8 428 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 TTC19Q6DKK2 380 aaPredicted RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 DLEU7Q6UYE1 221 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 OTUD6AQ7L8S5 288 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 DEFB132Q7Z7B7 95 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CBWD2Q8IUF1 395 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 TDHQ8IZJ6 230 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 PRSS35Q8N3Z0 413 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 MAPKAPK5-AS1Q8N8E1 139 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SMYD1Q8NB12 490 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ZNF540Q8NDQ6 660 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 OR2T12Q8NG77 320 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 OR4A16Q8NH70 328 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CCDC26Q8TAB7 109 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 METTL21AQ8WXB1 218 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 HAS2Q92819 552 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ESAMQ96AP7 390 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SLCO4A1Q96BD0 722 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CCDC127Q96BQ5 260 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ADGRG7Q96K78 797 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 CEP170P1Q96L14 293 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SYT11Q9BT88 431 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 MTMR12Q9C0I1 747 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 WWTR1Q9GZV5 400 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 LAT2Q9GZY6 243 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 TMEM117Q9H0C3 514 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SDR39U1Q9NRG7 319 aaPredicted RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 FGF21Q9NSA1 209 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 PIGVQ9NUD9 493 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SOHLH2Q9NX45 425 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 RSPH14Q9UHP6 348 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 NSG2Q9Y328 171 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SH3GLB1Q9Y371 365 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 TMED7Q9Y3B3 224 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 RIPK3Q9Y572 518 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 SCN9AQ15858 1988 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 ZNF646O15015 1829 aaPredicted RBP3.72□□□□□ -1.81
VPS29-202ENST00000447578 MYH8P13535 1937 aa3.72□□□□□ -1.81
VPS29-202ENST00000447578 IGLV5-45A0A087WSX0 123 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 LOC101059948A0A1B0GTJ6 334 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 A0A1W2PN81 502 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ANTXRLA6NF34 631 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 GOLGA6L10A6NI86 522 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 SLC15A5A6NIM6 579 aa3.71□□□□□ -1.82
VPS29-202ENST00000447578 ZNF233A6NK53 670 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms